Primary Citation PubMed: 18632862
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Highly similar structural frames link the template tunnel and NTP entry tunnel to the exterior surface in RNA-dependent RNA polymerases.
(2013) Nucleic Acids Res 41
PubMed: 23275546 | PubMedCentral: PMC3561941 | DOI: 10.1093/nar/gks1251
Viral species and PDB structures used as queries in this study Queries Abbreviations PDB Length of structure Picornaviridae, RdRp, +ssRNA Poliovirus PV 1RA6 ( 3 ) 4... 1 Poliovirus (open) PV 3OL6 ( 9 ) 471 Poliovirus (closed) PV 3OL7 ( 9 ) 471 Coxsackie virus COXV 3DDK ( 11 ) 462 Human rhinovirus HRV 1XR6 ( 12 ) 460 Human rhinovirus HRV 1XR7 ( 12 ) 460 Foot and mouth disease virus FMDV 1U09 ( 2 ) 476 Caliciviridae, RdRp, +ssRNA Norwalk virus NV 1SH0 ( 13 ) 510 Rabbit hemorrhagic disease virus RHDV 1KHV ( 14 ) 516 Rabbit hemorrhagic disease virus RHDV 1KHW ( 14 ) 516 Sapporo virus SAPV 2CKW ( 15 ) 515 Flaviviridae, RdRp, +ssRNA Hepatitis C virus HCV 1NB4 ( 16 ) 570 Hepatitis C virus HCV 1NB7 ( 16 ) 570 Bovine viral diarrhea virus BVDV 1S48 ( 17 ) 609 West Nile (Kunjin) virus WNV 2HCS ( 18 ) 595 Dengue virus DENV 2J7U ( 19 ) 635 Cystoviridae, RdRp, dsRNA Bacteriophage Phi6 PHI6 1HHS ( 20 ) 664 Bacteriophage Phi6 PHI6 1HI0 ( 20 ) 664 Reoviridae, RdRp, dsRNA Reovirus lambda 3 REOV 1MUK ( 21 ) 1267 Reovirus lambda 3 REOV 1N35 ( 21 ) 1267 Rotavirus ROTAV 2R7X ( 22 ) 1095 Birnaviridae, RdRp, dsRNA Infectious bursal disease, birnavirus IBDV 2PGG ( 5 ) 774 Infectious pancreatic necrosis IPNV 2YI8 ( 23 ) 799 Infectious pancreatic necrosis IPNV 2YI9 ( 23 ) 799 Infectious pancreatic necrosis IPNV 2YIA ( 23 ) 799 RdDp HIV1 HIV1 1RT1 ( 24 ) 560 HIV1 (closed) HIV1 1RTD ( 25 ) 554 HIV1 (open) HIV1 2HMI ( 26 ) 558 Tribolium castaneum TERT 3DU6 ( 27 ) 596 DdRp Bacteriophage T7 (closed) T7 RNAP 1S77 ( 28 ) 883 Bacteriophage T7 (closed) T7 RNAP 2AJQ ( 29 ) 704 Bacteriophage T7 (open) T7 RNAP 1MSW ( 30 ) 883 Bacteriophage N4 N4 3C2P ( 31 ) 1117 DdDp Thermus aquaticus (open) TAQ 2KTQ ( 32 ) 538 Thermus aquaticus (closed) TAQ 3KTQ ( 32 ) 540 Thermus aquaticus (open) TAQ 4KTQ ( 32 ) 539 Bacteriophage T7 T7 DNAP 1T7P ( 33 ) 698 Queries of both open and closed structures were used to assess the impact of this feature on R2R correspondence.
Publication Year: 2013
Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts.
(2013) PLoS One 8
PubMed: 23667424 | PubMedCentral: PMC3648537 | DOI: 10.1371/journal.pone.0060272
From left to right: all five PV ECs compared to one apo form (PDB code 1RA6); one CV EC compared to two apo forms (PDB codes 3DDK and 3DCU); two RV ECs compared to two apo forms (PDB code 1XR7 chains ... & B).
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