Citations in PubMed

Primary Citation PubMed: 3463986 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Dynamic clustering threshold reduces conformer ensemble size while maintaining a biologically relevant ensemble.

(2010) J Comput Aided Mol Des 24

PubMed: 20499135 | PubMedCentral: PMC2901495 | DOI: 10.1007/s10822-010-9365-1

Two structures (1RO9 and 3CPA) were removed from the list, because of questionable B-factors [ 16 ].

Publication Year: 2010

Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.

(2011) PLoS One 6

PubMed: 21799754 | PubMedCentral: PMC3143127 | DOI: 10.1371/journal.pone.0021875

g005 Figure 5 Comparison of the HxxE motifs in carboxypeptidase A [(A), PDB code 3cpa)] and PIBO [(B), PDB code 3n8u)].

Publication Year: 2011

A method to enhance the hit ratio by a combination of structure-based drug screening and ligand-based screening.

(2008) Adv Appl Bioinform Chem 1

PubMed: 21918604 | PubMedCentral: PMC3169939 | DOI: null

Appendix B The protein databank (PDB) identifier list of the basic protein set is: 1a28, 1a42, 1a4g, 1a4q, 1abe1, 1abe2, 1abf1, 1abf2, 1aco, 1ai5, 1aoe, 1apt, 1apu, 1aqw, 1atl, 1b58, 1b9v, 1bma, 1byb,... 1byg, 1c1e, 1c5c, 1c83, 1cbs, 1cbx, 1cdg, 1ckp, 1com, 1coy, 1cps, 1cvu, 1d0l, 1d3h, 1dd7, 1dg5, 1dhf, 1dog, 1dr1, 1ebg, 1eed, 1ejn, 1epb, 1epo, 1ets, 1f0r, 1f0s, 1f3d, 1fen, 1fkg, 1fki, 1fl3, 1glp, 1hdc, 1hfc, 1hos, 1hpv, 1hsb, 1hsl, 1htf1, 1htf2, 1hyt, 1ida, 1ivb, 1jap, 1lah, 1lcp, 1lic, 1lna, 1lst, 1mdr, 1mld, 1mmq, 1mrg, 1mts, 1mup, 1nco, 1ngp, 1nis, 1okl, 1pbd, 1phd, 1phg, 1poc, 1ppc, 1pph, 1pso, 1qbr, 1qbu, 1qpq, 1rds, 1rne, 1rnt, 1rob, 1snc, 1srj, 1tlp, 1tmn, 1tng, 1tnh, 1tni, 1tnl, 1tyl, 1xid, 1xie, 1yee, 2aad, 2ack, 2ada, 2cht, 2cmd, 2cpp, 2ctc, 2fox, 2gbp, 2ifb, 2pk4, 2qwk, 2tmn, 3cla, 3cpa, 3erd, 3ert, 3tpi, 4lbd, 4phv, 5abp1, 5abp2, 5cpp, 5er1, 6rnt, and 7tim.

Publication Year: 2008

Integration of ligand-based drug screening with structure-based drug screening by combining maximum volume overlapping score with ligand docking.

(2012) Pharmaceuticals (Basel) 5

PubMed: 24281339 | PubMedCentral: PMC3816669 | DOI: 10.3390/ph5121332

The target proteins were the macrophage migration inhibitory factor (PDB code: 1gcz), COX-2 (PDB code: 1cx2, 1pxx, 3pgh, 4cox and 6cox), HIV protease-1 (PDB code: 1aid, 1hpx and 1ivp), thermolysin (PD... code: 1tmn, 2tmn, 1tlp), and GST (PDB code: 18gs, 2gss, and 3pgt), and carboxypeptidase A (PDB code: 1cbx, 1cps, 3cpa).

Publication Year: 2012

The Protein Data Bank archive as an open data resource.

(2014) J Comput Aided Mol Des 28

PubMed: 25062767 | PubMedCentral: PMC4196035 | DOI: 10.1007/s10822-014-9770-y

Early structures included myoglobin ( 1 PDB ID 1mbn [ 6 , 7 ]), the first structure solved by X-ray crystallography, and small enzymes ( 2 top 4pti [ 48 ], bottom right 2cha [ 49 ], bottom left 3cpa [... 50 ]).

Publication Year: 2014