Citations in PubMed

Primary Citation PubMed: 18420935 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Comparative analysis of species-specific ligand recognition in Toll-like receptor 8 signaling: a hypothesis.

(2011) PLoS One 6

PubMed: 21949866 | PubMedCentral: PMC3176813 | DOI: 10.1371/journal.pone.0025118

Results and Discussion Sequence analysis and comparative model of TLR8 The crystal structures of hTLR3 (1ZIW) and mTLR3 (3CIY) were the two structurally homologous proteins showing higher sequence sim... larity to the individual target LRRs.

Publication Year: 2011

GARP regulates the bioavailability and activation of TGF?.

(2012) Mol Biol Cell 23

PubMed: 22278742 | PubMedCentral: PMC3302739 | DOI: 10.1091/mbc.E11-12-1018

The segments used were the N-cap and LRR1-4 of variable lymphocyte receptor Vlra.R5.1 (PDB code 3M19) for the N-cap and LRR1-4 of GARP; the LRR2-6 of mouse toll-like receptor 3 (PDB code 3CIY) for LRR... -7 of GARP; the LRR8-11 of Lrim1 leucine-rich repeat domain (PDB code 3O53) for LRR7-10 of GARP; the LRR2-6 of the hagfish variable lymphocyte receptors (PDB code 2O6S) for LRR10-14 of GARP; the LRR5-8 of glycoprotein Ib (PDB code 3PMH) for LRR14-17 of GARP and the LRR2-8 and C-cap of neuronal leucine-rich repeat protein Amigo-1 (PDB code 2XOT) for the LRR17-23 and C-cap of GARP.

Publication Year: 2012

Different dimerisation mode for TLR4 upon endosomal acidification?

(2012) Trends Biochem Sci 37

PubMed: 22196451 | PubMedCentral: PMC3323831 | DOI: 10.1016/j.tibs.2011.11.003

(b) When bound to their ligand (double-stranded RNA) at acidic pH, TLR3 dimers are tilted (PDB code 3CIY).

(d) A TLR4-MD-2-LPS dimer arranged in a TLR3-like tilted conformation was built in PyMol by superimposing receptor chain A of a first copy of 3FXI (3FXI1) onto chain A of 3CIY.

Publication Year: 2012

Mice, men and the relatives: cross-species studies underpin innate immunity.

(2012) Open Biol 2

PubMed: 22724060 | PubMedCentral: PMC3376732 | DOI: 10.1098/rsob.120015

( a ) Overlay of the ectodomains of murine TLR3 (PDB 3ciy, red) and both human TLR3 structures (PDB 2a0z, orange; PDB 1ziw, blue).

PDB files are associated with the following references: PDB 1ziw [ 35 ]; PDB 2a0z [ 36 ]; PDBs 2z62, 2z63, 2z64, 2z65, 2z66 [ 37 ]; PDBs 2z80, 2z81, 2z82, 2z7x [ 38 ]; PDB 3ciy [ 39 ]; PDB 3fxi [ 40 ]; PDBs 3a79, 3a7b, 3a7c [ 41 ]; and PDBs 3v44, 3v47 [ 42 ].

Publication Year: 2012

Function and 3D structure of the N-glycans on glycoproteins.

(2012) Int J Mol Sci 13

PubMed: 22942711 | PubMedCentral: PMC3430242 | DOI: 10.3390/ijms13078398

( a ) Fully glycosylated Toll-like receptor-3 (TLR3) ectodomain in complex with dsRNA (PDB code; 3ciy).

The structure of mouse TLR3 ectodomain in complex with dsRNA demonstrates that dsRNA contacts occur through residues on the glycosylation-free surface (PDB code; 3ciy, [ 96 ]).

Publication Year: 2012

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4529986

Table 4 Protein-RNA complexes in RB344 dataset RNA category PDB ID RNAse 2BX2 2IX1 2NUG 2QKB 2XDB 2Y8Y 3BSU 3IAB 3T3O 3ULD 4 AM3 4ATO SRP 1E8O 1HQ1 1JID 1LNG 1MFQ 2V3C 3KTW Aptamer 1OOA 3AGV 3... D2 3V7E dsRNA 1DI2 2YKG 3CIY 3EQT 3LRR 4IG8 Exosome 2JEA 2PO1 2VNU 4IFD mRNA 1FXL 1GTF 1MSW 1UVM 1WPU 1WSU 1ZH5 2A8V 2F8K 2IPY 2J0S 2O5I 2PJP 2Q66 2VPL 2XGJ 2XNR 2XS2 2XZO 3BX2 3D2S 3I5X 3ICE 3MDI 3NMR 3P6Y 3PEY 3PO3 3Q0Q 3QGC 3R2C 3RER 4 F02 4HXH 4J7L 4JVY Ribosomal 1DFU 1FEU 1FKA 1HR0 1I6U 1JBS 1MJI 1MMS 1MZP 1NKW 1SDS 1T0K 1UN6 1VQ8 1VQO 1Y69 2ASB 2BH2 2D3O 2 J01 2QA4 2VQE 2XFZ 2ZJQ 2ZJR 3AEV 3DH3 3F1E 3HUW 3I8I 3IEV 3KIS 3MOJ 3OIN 3R8S 3R8T 3R9X 3SFS 3SGF 3UMY 3 V24 3 V26 3V2C 3V2D 3V2F 3ZN9 4DH9 4GD1 4JUW 4JUX Small 1SI3 1YVP 2BGG 2F8S 3A6P 3ADI 3HO1 3HTX 3 MJ0 3NMU 3NVI 3O7V 3VYX 3VYY 3ZC0 4F1N 4KRE snRNP 1M8V 1URN 2OZB Splicing 1A9N 2G4B tRNA 1ASY 1B23 1C0A 1F7U 1FFY 1GAX 1H3E 1H4S 1J1U 1J2B 1K8W 1 N78 1Q2R 1QF6 1QTQ 1R3E 1SER 1U0B 1VFG 1WZ2 2AZX 2B3J 2CT8 2CZJ 2D6F 2DER 2DLC 2DU3 2FK6 2FMT 2GJW 2I82 2IY5 2ZNI 2ZUE 2ZZM 3AL0 3 AM1 3AMT 3BT7 3EPH 3FOZ 3HL2 3ICQ 3KFU 3OVB 3QSY 3TUP 3VJR 3W3S 3ZGZ 4ARC Viral 1A34 1AV6 1DDL 1F8V 1HYS 1KNZ 1 N35 1PGL 1R9F 2AZ2 2BU1 2GIC 2GTT 2JLV 2QUX 2R7W 2W2H 2WJ8 2Z2Q 2ZI0 2ZKO 3AVX 3BSO 3KMQ 3 L25 3O8C 3RW6 3T5N 4FY7 4GV9 4H5P 4HKQ 4J1G 4K4Z Other 1EC6 2ANR 2DB3 2GJE 2GXB 2PY9 2R8S 2XLK 3AF6 3HAX 3IEM 3PF4 3PKM 3QJL 3RC8 3S14 4B3G 4ERD 4FXD 4GG4 4ILL PDB ID of protein-RNA complexes in RB344 dataset Identification of protein surface residues To determine protein surface residues, accessible areas will be computed first.

Publication Year: 2015