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PDB ID Mentions in PubMed Central Article count: 1

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PDB ID Mentions in PubMed Central

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Genomic insights into the fungal lignocellulolytic system of Myceliophthora thermophila.

(2014) Front Microbiol 5

PubMed: 24995002 | PubMedCentral: PMC4061905 | DOI: 10.3389/fmicb.2014.00281

Protein_ ID InterPro_ ID InterPro_ description CAZy module GenBank ID Location Secretion signal Exons pI/MW (kDa) Length N-gly positions O-gly positions CBM1 BLAST parameters EGs MYCTH_ 52068 IPR01785... Glycoside hydrolase, catalytic core GH5 AEO58455.1 4:188041–189524 18aa 7 4.66/35.2 319aa 3 2 − MYCTH_ 86753 IPR017853 Glycoside hydrolase, catalytic core GH5 AEO53769.1 1:2823610–2825549 16aa 3 5.07/40.85 389aa 3 17 + 65% identity with endoglucanase GH5 from Thermoascus aurantiacus [PDB ID: 1GZJ] and 79% with β-1,4-endoglucanase from Penicillium brasilianum [GenBank: ACB06750] MYCTH_ 94336 IPR017853 Glycoside hydrolase, catalytic core GH5 AEO57401.1 3:908597–909880 21aa 1 4.92/44.6 406aa 2 4 − 61% identity with cellulase family protein from Ophiostoma piceae UAMH 11346 [GenBank: EPE03278.1] MYCTH_ 43356 IPR017853 Glycoside hydrolase, catalytic core GH5 AEO53175.1 1:580471–581733 26aa 1 7.86/44.18 394aa 1 2 − 71% identity with EG from endoglucanase Verticillium dahliae [GenBank: EGY21718.1] MYCTH_ 116157 IPR017853 Glycoside hydrolase, catalytic core GH7 AEO59361.1 4:4081701-4083768 20aa 2 4.75/47.20 436aa 2 2 − 68% identity with endo-1,4-beta-glucanase from Humicola grisea [UniProtKB/Swiss-Prot:Q12622.1] MYCTH_ 111372 IPR017853 Glycoside hydrolase, catalytic core GH7 AEO58196.1 3:4135959–4137568 22aa 1 4.61/46.632 442aa 2 16 + 64% identity with endoglucanase I from Hypocrea orientalis [GenBank: AFD50194.1] MYCTH_ 109444 IPR008985 Concanavalin A-like lectin/glucanases superfamily GH12 AEO60532.1 6:212893–214302 15aa 3 5.46/25.48 247aa − − − 56% identity with Cel12A from Humicola grisea [PDB ID: 1OLR] and 63% with endoglucanase from Fusarium oxysporum [GenBank: ENH72093.1] MYCTH_ 76901 IPR014733 Barwin-like endoglucanase GH45 AEO54078.1 1:4001048–4002222 18aa 4 4.66/21.8 207aa − 3 − 78% identity with endoglucanase from Humicola insolens [PDB ID: 1HD5] and 82% with endoglucanase from Humicola grisea [GenBank: BAA74957.1] CBHs MYCTH_ 51545 IPR016288 1,4-beta cellobiohydrolase GH6 AEO59280.1 4:3726723–3728113 17aa 3 4.66/40.64 378aa − 4 − 49% identity with CBHII from Trichoderma reesei [GenBank: ADC83999.1] and 51% with CBHII from Trichoderma reesei [PDB ID: 3CBH] MYCTH_ 66729 IPR016288 1,4-beta cellobiohydrolase GH6 AEO55787.1 2:46305–48489 17aa 4 5.28/49.41 465aa 1 35 + 79% identity with CBH II from Humicola insolens [PDB ID: 1BVW] and 64% with CBHII from Trichoderma viride [GenBank: AAQ76094.1] MYCTH_ 2303045 IPR016288 1,4-beta cellobiohydrolase GH6 AEO57190.1 2:5389544–5391132 18aa 2 5.94/39.41 363aa 4 5 − 56% identity with endoglucanase Cel6b from Humicola insolens [PDB ID: 1DYS] and 39% with Cellobiohydrolase II (Cel6a) from Humicola insolens [1BVW] MYCTH_ 109566 IPR008985 Concanavalin A-like lectin/glucanases superfamily GH7 AEO55544.1 1:9753507–9755507 17aa 2 4.77/54 509aa 1 20 + 61% identity with CBH I from Humicola grisea [GenBank: BAA09785.1] and 67% with cellobiohydrolase Cel7d (Cbh 58) from Phanerochaete chrysosporium [PDB: 1GPI] MYCTH_ 42937 IPR008985 Concanavalin A-like lectin/glucanases superfamily GH7 AEO53522.1 1:1922814–1924693 20aa 5 4.34/47.08 436aa 2 2 − 66% identity with β-1,4-cellobiohydrolase from Phanerochaete chrysosporium [UniProtKB: P13860.1] MYCTH_ 97137 IPR008985 Concanavalin A-like lectin/glucanases superfamily GH7 AEO61262.1 7:24661–26448 20aa 6 4.48/46.5 430aa − 79% identity with β-1,4-beta-cellobiosidase from Melanocarpus albomyces [GenBank: CAD56667.1] MYCTH_ 95095 fragment IPR008985 Concanavalin A-like lectin/glucanases superfamily GH7 AEO58824.1 4:1967106–1967560 19aa 2 6.87/11.82 109aa 1 4 C-term, no prediction 77% identity with β-1,4-beta-cellobiosidase from Acremonium thermophilum [GenBank: CAM98446.1] BGLs MYCTH_ 115968 IPR017853 Glycoside hydrolase, catalytic core GH1 AEO57459.1 3:1092854–1095039 − 2 5.53/54.1 476aa 1 − − 92% identity with β-glucosidase from Humicola grisea [GenBank: BAA74958.1] MYCTH_ 38200 IPR017853 Glycoside hydrolase, catalytic core GH3 AEO61246.1 6:4096305–4099311 − 2 5.54/105.3 968aa 7 3 − 78% identity with β-glucosidase from Chaetomium thermophilum var.

Publication Year: 2014