Citations in PubMed

Primary Citation PubMed: 10222201 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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In silico screening of mutational effects on enzyme-proteic inhibitor affinity: a docking-based approach.

(2007) BMC Struct Biol 7

PubMed: 17559675 | PubMedCentral: PMC1913526 | DOI: 10.1186/1472-6807-7-37

From X-ray crystallography, two 3D-structures of the wild type BPTI-β- trypsin complex are available at 1.85 Å (PDB entry 2PTC)[ 51 ] and 1.90 Å resolution (PDB entry 3BTK) [ 2... ].

Publication Year: 2007


QacR-cation recognition is mediated by a redundancy of residues capable of charge neutralization.

(2008) Biochemistry 47

PubMed: 18616285 | PubMedCentral: PMC2646753 | DOI: 10.1021/bi8008246

The atomic coordinates and structure factors for each structure have been deposited in the Protein Data Bank as entries 3BT9 for the QacR(E57Q)−Dq complex, 3BTC for the QacR(E57Q)−MG c... mplex, 3BTI for the QacR(E58Q)−Be complex, 3BTJ for the QacR(E58Q)−Dq complex, and 3BTK for the QacR(E58Q)−MG complex.

Publication Year: 2008


Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors.

(2010) BMC Struct Biol 10

PubMed: 20961427 | PubMedCentral: PMC2974730 | DOI: 10.1186/1472-6807-10-36

Table 3 Evaluation of the success rate (ACC) of predicting IFR ensemble PDB ID Subfamily Organism TP TN FP FN ACC 1FY8 Trypsin Bos taurus 44 244 0 0 1 3TGI Trypsin Bos taurus 42 239 5 0 0.98 1TPA Tryp... in Bos taurus 44 240 1 3 0.98 3BTK Trypsin Bos taurus 43 241 1 4 0.98 3TPI Trypsin Bos taurus 43 242 1 2 0.98 2PTC Trypsin Bos taurus 44 241 0 3 0.98 2TGP Trypsin Bos taurus 45 240 0 3 0.98 4TPI Trypsin Bos taurus 44 239 1 4 0.98 2TPI Trypsin Bos taurus 44 241 1 2 0.98 1BZX Trypsin Bos taurus 43 242 2 1 0.98 1BRB Trypsin Rattus novergicus 41 236 2 2 0.98 1FAK Coagulation factor VIII Homo sapiens 44 247 6 0 0.97 1CBW Chymotrypsin Bos taurus 44 238 5 1 0.97 1MTN Chymotrypsin Bos taurus 45 239 1 3 0.98 2KAI Kallikrein Bos taurus 57 224 0 4 0.98 1EAW Matriptase MTSP1 Homo sapiens 42 241 4 1 0.98 The true positives (TP) are IFR residues present in both the native and the rigid body docked complexes.

Publication Year: 2010


Protein surface softness is the origin of enzyme cold-adaptation of trypsin.

(2014) PLoS Comput Biol 10

PubMed: 25165981 | PubMedCentral: PMC4148182 | DOI: 10.1371/journal.pcbi.1003813

Methods Atomic coordinates for psycrophilic and mesophilic trypsin were obtained from the crystallographic structures with PDB entries 1BZX [13] and 3BTK [14] , respectively.

Publication Year: 2014