Citations in PubMed

Primary Citation PubMed: 19533744 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Measuring the successes and deficiencies of constant pH molecular dynamics: a blind prediction study.

(2011) Proteins 79

PubMed: 22072520 | PubMedCentral: PMC3227005 | DOI: 10.1002/prot.23136

31 – 37 Along with other computational groups, we have computed blind p K a predictions for residues of wild-type SNase (PDB ID: 1STN or 1SNC), the SNase mutant Δ+PHS (PDB ID: 3bdc), a... d various mutants from the Δ+PHS parent protein (referred to as calculated results in this study).

Publication Year: 2011

On the Dielectric "Constant" of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi.

(2013) J Chem Theory Comput 9

PubMed: 23585741 | PubMedCentral: PMC3622359 | DOI: 10.1021/ct400065j

In 19 of the cases, the p K a calculations were based on the structure of wild type (PDB ID: 1stn) 48 SNase and its hyperstable variant (PDB ID: 3bdc), 46 which is called Δ+PHS.

In 20 of the cases, p K a calculations were based on the X-ray structures of SNase with mutations, and in 50 of the cases, the p K a calculations were based on the in silico generated mutant from the wild type SNase (PDB ID: 3bdc; list of the amino acids, structure used, and experimental p K a ’s are available from the p K a Cooperative web page, ).

Publication Year: 2013