Citations in PubMed

Primary Citation PubMed: 21203961 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Novel inhibitor design for hemagglutinin against H1N1 influenza virus by core hopping method.

(2011) PLoS One 6

PubMed: 22140516 | PubMedCentral: PMC3227604 | DOI: 10.1371/journal.pone.0028111

The bind-site encompassed the ligand N-Acetyl-D-Glucosamine (NAG), which is observed in complex with HA1 of the crystal structure (PDB: 3AL4).

g001 Figure 1 A close-up view for the binding site of HA1 (PDB ID: 3AL4).

Virtual screening and Core hopping The drug-like database from ZINC [38] was screened by using Glide5 for its near-optimal performance aimed on targeting the HA1 receptor (PDB ID:3AL4).

Its PDB ID is 3AL4.

Virtual screening The Glide5 docking program [39] interfaced with Schrodinger Suite 2009 [33] was used to screen the drug-like database from ZINC [38] based on the 3D structure of 3AL4.

Publication Year: 2011


Characterization of influenza hemagglutinin interactions with receptor by NMR.

(2012) PLoS One 7

PubMed: 22815674 | PubMedCentral: PMC3397988 | DOI: 10.1371/journal.pone.0033958

(a) Surface topology of the sialic acid binding site on H1 HA [33] (PDB entry 3AL4).

Publication Year: 2012


A recommended numbering scheme for influenza A HA subtypes.

(2014) PLoS One 9

PubMed: 25391151 | PubMedCentral: PMC4229193 | DOI: 10.1371/journal.pone.0112302

Alternative structures include six (3AL4, 4JTV and 4JU0) or ten (3LZG, 3UBE, 3UBN, 3UBQ and 4F3Z) additional N-terminal amino acids.

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4452332

The HA crystal structure of the H1 subtype influenza virus [A/California/04/2009(H1N1)] (PDB 3AL4.

Publication Year: 2015


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4479056

Citation: Alhazmi, Bioinformation 11(4): 196-202 (2015) References 1 Collins PJ Nature 2008 453 1258 18480754 2 Das K J Med Chem 2012 55 6263 22612288 3 Gallaher WR Virol J 2009 6 51 19422701 4 Harris... n SC Nat Struct Mol Biol 2008 15 690 18596815 5 Crusat M Antivir Ther 2007 12 593 17944267 6 Gurib-Fakim A Mol Aspects Med 2006 27 1 16105678 7 Pattanayak P Pharmacogn Rev 2010 4 95 22228948 8 Sharma V International Journal of Recent Scientific Research 2014 5 142 9 Morris GM J Comput Chem 1998 19 1639 10 Guex N Electrophoresis 1997 18 2714 9504803 11 Trott O J Comput Chem 2010 31 455 19499576 12 Lipinski CA Adv Drug Deliv Rev 2001 46 3 11259830 13 Pardridge WM NeuroRx 2005 2 3 15717053 14 Zlokovic BV Neuron 2008 57 178 18215617 15 Zhao YH J Pharm Sci 2001 90 749 11357178 16 Hellinger E Eur J Pharm Sci 2010 41 96 20595016 17 Ruela-de-Sousa RR Cell Death Dis 2010 1 e19 21364620 18 Si D Drug Metab Dispos 2009 37 629 19074529 19 Chong FW Malays J Pathol 2009 31 35 19694312 20 Taupin P Expert Opin Ther Pat 2009 19 523 19441930 Figure 1 Molecular docking interaction between Apigenin molecule with Influenza viral proteins such as (PDB ID) A) 1NCA; B) 1NN2; C) 2HU4; D) 3CL2; E) 3B7E; F) 3CKZ, are Neuraminidase proteins, G) 3AL4 and H) 3LZG are Hemagglutinin proteins binding energy and their ligplot interaction energy were calculated based on hydrogen bonds, polar, cation-pi, hydrophobic and other energies.

Publication Year: 2015