Primary Citation PubMed: 1948029
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CC+: a relational database of coiled-coil structures.
(2009) Nucleic Acids Res 37
PubMed: 18842638 | PubMedCentral: PMC2686509 | DOI: 10.1093/nar/gkn675
This returned 10 coiled-coil assignments, but these did not include 2ZTA itself as it is redundant to another structure.
However, with the redundancy field of the SPECIFY STRUCTURES tab set to ‘redundant’, the search returned 67 coiled-coil assignments, including 2ZTA.
Images were created using PyMOL ( 8 ) and the PDB entry 2ZTA ( 9 ).
(This keyword was chosen because the archetypal leucine zipper, the PDB entry 2ZTA ( 9 ), is from the yeast transcriptional activator GCN4.)
Publication Year: 2009
The leucine zipper domains of the transcription factors GCN4 and c-Jun have ribonuclease activity.
(2010) PLoS One 5
PubMed: 20505831 | PubMedCentral: PMC2874015 | DOI: 10.1371/journal.pone.0010765
( II ) Topological arrangement of side chains in the proposed catalytic sites of c-Jun LZ36 (PDB: 1JUN) and GCN4 LZ35 (PDB: 2ZTA).
Publication Year: 2010
SwarmDock and the use of normal modes in protein-protein docking.
(2010) Int J Mol Sci 11
PubMed: 21152290 | PubMedCentral: PMC2996808 | DOI: 10.3390/ijms11103623
In target 37, acceptable predictions were made for Arf6 in complex with the LZ2 leucine zipper of JIP4 (pdb 2W83 [ 66 ]) by docking the unbound Arf6 (pdb 2A5D [ 67 ]) to a homology model of the leucin... zipper built with the POPULUS server [ 68 ] using the GCN4 zipper as a template (pdb 2ZTA [ 69 ]).
Crystal structure of a coiled-coil domain from human ROCK I.
(2011) PLoS One 6
PubMed: 21445309 | PubMedCentral: PMC3061879 | DOI: 10.1371/journal.pone.0018080
For comparison, the GCN4 leucine zipper (PDB code 2ZTA, 31 residues)  has an average inter-helical distance of 9.7 Å with a standard deviation of 0.26 Å.
Publication Year: 2011
Drosophila IAP antagonists form multimeric complexes to promote cell death.
(2010) J Cell Biol 190
PubMed: 20837774 | PubMedCentral: PMC3101595 | DOI: 10.1083/jcb.201004086
To the right are schematic representations of RprLZ and RprProP with the IBM Rpr (shown in red), ribbon representations of the dimerization domains LZ (PDB #2ZTA) and ProP (PDB #1R48) (shown in blue) ... nd the Tail Rpr (shown in black).
Multiple pH regime molecular dynamics simulation for pK calculations.
PubMed: 21647418 | PubMedCentral: PMC3103538 | DOI: 10.1371/journal.pone.0020116
Methods Model building The crystal structure of the GCN4 leucine zipper (Protein Data Bank entry code 2zta.
Mcm10 self-association is mediated by an N-terminal coiled-coil domain.
(2013) PLoS One 8
PubMed: 23894664 | PubMedCentral: PMC3720919 | DOI: 10.1371/journal.pone.0070518
(C) Stereoview of the Mcm10 CC dimer model (green) superimposed on the CGN4 CC (grey, PDB ID 2ZTA).
Publication Year: 2013
Crystal structure of the human short coiled coil protein and insights into SCOC-FEZ1 complex formation.
PubMed: 24098481 | PubMedCentral: PMC3788124 | DOI: 10.1371/journal.pone.0076355
Both values are similar to the coiled coil pitch of 135 Å for the regular left-handed parallel coiled coil GCN4 leucine zipper dimer (pdb entry: 2ZTA).
CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
(2014) Bioinformatics 30
PubMed: 25064570 | PubMedCentral: PMC4201159 | DOI: 10.1093/bioinformatics/btu502
These are for the well-characterized coiled-coil dimer from the yeast transcriptional activator GCN4 (2ZTA) ( Gonzalez et al. , 1996 ), an antiparallel dimeric coiled coil from bovine IF1 (1GMJ) ( Cab... zón et al. , 2001 ), the de novo parallel hexameric coiled coil CC-Hex (3R3K) ( Zaccai et al. , 2011 ) and a slipped engineered heptameric mutant of the aforementioned GCN4 peptide (2HY6) ( Liu et al. , 2006 ).
( a ) Parallel dimer (2ZTA) RMSD 0.59 Å all atoms, 0.30 Å backbone and 0.30 Å C α only.
Publication Year: 2014
Data-driven prediction and design of bZIP coiled-coil interactions.
(2015) PLoS Comput Biol 11
PubMed: 25695764 | PubMedCentral: PMC4335062 | DOI: 10.1371/journal.pcbi.1004046
For this purpose, the coiled-coil Crick parameterization server was used to generate a backbone template based on the crystal structure of the coiled coil from yeast bZIP GCN4 (PDB ID: 2zta), as was d... ne in previous work [ 16 ].
Publication Year: 2015
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