Primary Citation PubMed: 20141146
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Molecular modeling studies of 4,5-dihydro-1H-pyrazolo[4,3-h] quinazoline derivatives as potent CDK2/Cyclin a inhibitors using 3D-QSAR and docking.
(2010) Int J Mol Sci 11
PubMed: 21152296 | PubMedCentral: PMC2996803 | DOI: 10.3390/ijms11103705
Since the crystal structure of CDK2/cyclin A was known, we docked compound 19 into the allosteric site of CDK2/cyclin A (PDB code 2WXV), and the surfex-dock total score was 9.17.
The crystal structure of CDK2/cyclin A was obtained from Protein Data Bank, having a PDB entry of 2WXV.
Figure 5 The binding mode between compound 19 and the allosteric site of CDK2/cyclin A (PDB code 2WXV).
Figure 6 MOLCAD cavity depth potential surface of the allosteric site of CDK2/cyclin A (PDB code 2WXV) within the compound 19.
Figure 7 The MOLCAD electrostatic potential surface of the allosteric site of CDK2/cyclin A (PDB code 2WXV) within the compound 19.
Figure 8 The MOLCAD Ribbon Surfaces of the allosteric site of CDK2/cyclin A (PDB code 2WXV) within the compound 19.
Publication Year: 2010
3D-QSAR and 3D-QSSR studies of thieno[2,3-d]pyrimidin-4-yl hydrazone analogues as CDK4 inhibitors by CoMFA analysis.
(2014) Acta Pharmacol Sin 35
PubMed: 24122012 | PubMedCentral: PMC4075745 | DOI: 10.1038/aps.2013.105
In order to construct the inhibitor located at the active site of CDK4, the X-ray structure of CDK2 complexed with a pyrazolo(4,3-H) quinazoline-3-carboxamide inhibitor (PDB ID:2WXV) was aligned with ... he CDK4 crystal structure (PDB ID:2W9F) using Align Structures in the Homology module of SYBYL 6.9 18 .
Publication Year: 2014
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