Primary Citation PubMed: 19696737
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors.
(2012) J Gen Physiol 140
PubMed: 22732309 | PubMedCentral: PMC3382718 | DOI: 10.1085/jgp.201210801
: 2WN9 , 2WNL , 2BYN (apo-), 2PGZ , 2W8F , 2W8G , 2XYT , 2WNJ , 2BYQ , 2BR7 , 3C79 , 2BYR , 2XYS , 3GUA , 3C84 , 2WNC , 2XZ6 , 2XZ5 , and 2BYS .
Publication Year: 2012
Design, synthesis, and structure-activity relationships of highly potent 5-HT? receptor ligands.
(2012) J Med Chem 55
PubMed: 23006041 | PubMedCentral: PMC3504484 | DOI: 10.1021/jm300801u
Homology Modeling A model of the 5-HT 3 A receptor binding site was constructed by homology modeling using MOE (version 2010.10, Chemical Computing Group Montreal), 50 based on the tropisetron bound A... hBP X-ray crystal structure determined at 2.20 Å resolution (PDB code: 2WNC).
A homology model of the 5-HT 3 A receptor binding site was constructed using the tropisetron bound AChBP crystal structure (PDB ID: 2WNC ) as a template.
Structural waters located in this binding pocket of the 2WNC crystal structure form a conserved protein–ligand H-bond interaction network in several other AChBP crystals containing small competitive antagonists (e.g., 2BYR , 2PGZ , 2BYS , 2XYT ( 44 )), and were included in the 5-HT 3 A receptor model.
(a) Overlay of the waters participating in the structural water network in several different AChBP crystal structures (red: 2WNC ; blue: 2BYR ; cyan: 2PGZ ; green: 2BYS ; yellow: 2XYT ).
Structural basis of ligand recognition in 5-HT3 receptors.
(2013) EMBO Rep 14
PubMed: 23196367 | PubMedCentral: PMC3537142 | DOI: 10.1038/embor.2012.189
Similar to the complex with tropisetron (pdb code 2wnc) and nicotinic receptor ligands, the tropane nitrogen of granisetron forms a hydrogen bond with the carbonyl oxygen of W145.
Publication Year: 2013
Structure-activity relationships of quinoxaline-based 5-HT3A and 5-HT3AB receptor-selective ligands.
(2013) ChemMedChem 8
PubMed: 23640722 | PubMedCentral: PMC4063337 | DOI: 10.1002/cmdc.201300032
Structural waters located in the binding pocket of the original crystal structure (PDB code: 2WNC) 19 form a conserved protein–ligand hydrogen bond interaction network in several other AChBP c... ystals (e.g., 2BYR, 2PGZ, 2BYS, 2XYT) and were included in the 5-HT 3 AB receptor model.
Homology models were based on a tropisetron-bound AChBP crystal structure (PDB code: 2WNC) as no quinoxaline-bound Cys-loop receptor structure has been solved to date, and tropisetron is the closest structurally related compound to those described here (Figure 3 ).
The binding characteristics and orientation of a novel radioligand with distinct properties at 5-HT3A and 5-HT3AB receptors.
(2014) Neuropharmacology 86
PubMed: 25174552 | PubMedCentral: PMC4220016 | DOI: 10.1016/j.neuropharm.2014.08.008
In the 5HTBP crystal structure granisetron does not extend towards loop E, but instead lies horizontally between loops B and D, similar to the orientations of the closely related ligands tropisetron (... WNC) and cocaine (2PGZ) in AChBP.
(5) k on = k obs − k off [ L ] 2.6 Homology modelling The protein sequence of the human 5-HT3A subunit (accession number; P46098) was aligned with a tropisetron bound AChBP template (PDB ID; 2WNC) using FUGUE.
Publication Year: 2014
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.