Citations in PubMed

Primary Citation PubMed: 19018096 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.

(2013) J Appl Crystallogr 46

PubMed: 23396873 | PubMedCentral: PMC3547227 | DOI: 10.1107/S0021889812044172

Comparison of diffraction data processing software   All the crystal structures were solved using molecular replacement with Phaser (McCoy et al. , 2007 ▶ ) and restrained refinement w... th TLS (translation–libration–screw motion) in REFMAC5 (Vagin & Teplyakov, 2010 ▶ ) in CCP4i ( http://www.ccp4.ac.uk/ccp4i_main.php ), using the lysozyme structure 2w1y as the molecular search model (Cianci et al. , 2008 ▶ ).

Publication Year: 2013


The binding of platinum hexahalides (Cl, Br and I) to hen egg-white lysozyme and the chemical transformation of the PtI6 octahedral complex to a PtI3 moiety bound to His15.

(2014) Acta Crystallogr F Struct Biol Commun 70

PubMed: 25195880 | PubMedCentral: PMC4157407 | DOI: 10.1107/S2053230X14014009

The crystal structures were solved using Phaser (McCoy et al. , 2007 ▶ ) followed by rigid-body and restrained refinement with REFMAC 5 in CCP 4 (Murshudov et al. , 2011 ▶ ), using the... previously reported lysozyme structure with PDB code 2w1y as the molecular search model (Cianci et al. , 2008 ▶ ).

The use of Phaser was probably not required as 2w1y is relatively isomorphous to these crystals.

Publication Year: 2014


Carboplatin binding to histidine.

(2014) Acta Crystallogr F Struct Biol Commun 70

PubMed: 25195881 | PubMedCentral: PMC4157408 | DOI: 10.1107/S2053230X14016161

The crystal structures were solved using molecular replacement with Phaser (McCoy et al. , 2007 ▶ ), using the reported lysozyme structure with PDB code 2w1y as a molecular search model (Cianc... et al. , 2008 ▶ ) and restrained refinement with REFMAC 5 (Murshudov et al. , 2011 ▶ ) from CCP 4 (Winn et al. , 2011 ▶ ).

Publication Year: 2014


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4312553

Data from the following PDB entries were used in this work (for additional details of datasets used and results for each dataset see Supplementary Data 1 and Supplementary Data 3 ): 1VJN , 1VJR , 1VJZ... , 1VK4 , 1VKM 26 , 1VLM , 1VQR 27 , 1Z82 , 1ZYB , 2A3N , 2A6B , 2AML , 2AVN , 2B8M , 2ETD , 2ETJ , 2ETS 28 , 2ETV , 2EVR 29 , 2F4P , 2FDN 30 , 2FEA 31 , 2FFJ , 2FG0 29 , 2FG9 , 2FNA 32 , 2FQP , 2FUR , 2FZT , 2G42 , 2GC9 , 2NLV 33 , 2NUJ , 2NWV 33 , 2O08 , 2O1Q , 2O2X , 2O2Z , 2O3L , 2O62 , 2O7T , 2O8Q , 2OBP , 2OC5 , 2OD5 , 2OD6 , 2OH3 , 2OKC , 2OKF 33 , 2OOJ , 2OPK , 2OSD , 2OTM , 2OZG , 2OZJ , 2P10 , 2P4O , 2P7I , 2P97 , 2PG3 , 2PG4 , 2PGC , 2PIM , 2PN1 , 2PPV , 2PR7 , 2PRV , 2PRX , 2PV4 , 2PW4 , 3K9G 34 , 3KM3 34 , 3QQC 35 , 2AZP, 2HZG, 2QDN 36 , 2W1Y 37 , 4J8S 38 , 2I52, 2ZY6 39 , 3GB5 40 .

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4461204

The bromide locations are isomorphous with chlorides and bromides in published lysozyme structures (chloride, PDB entries 1gwd , 2w1l , 2w1y , 2w1x , 2w1m , 4a7d , 2xoa , 2xbs , 2xbr , 2xjw , 1w6z and... 4aga ; bromide, PDB entry 1azf ), which typically contain from three to nine halides.

Publication Year: 2015