Primary Citation PubMed: 23665168
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Pharmacophore and 3D-QSAR characterization of 6-arylquinazolin-4-amines as Cdc2-like kinase 4 (Clk4) and dual specificity tyrosine-phosphorylation-regulated kinase 1A (Dyrk1A) inhibitors.
(2013) J Chem Inf Model 53
PubMed: 23496085 | PubMedCentral: PMC3633254 | DOI: 10.1021/ci300625c
To study possible hydrogen bonding interactions with docked ligands, constraints were applied on some Clk4 atoms, i.e., the backbone hydrogen of Leu242, according to the participation of its correspon... ing residues in hydrogen bonding in crystal structures of Clk1 (PDB ID: 1Z57) and Dyrk1A (PDB IDs: 3ANQ, 3ANR, 2WO6, and 2VX3).
By contrast, the involvement of the residue at the same position as Leu242 in the hydrogen bond interaction is only available at one of the Clk1 structures (PDB ID: 1Z57) but is available at all identified Dyrk1A structures (PDB IDs: 3ANQ, 3ANR, 2WO6, and 2VX3).
Publication Year: 2013
Structures of Down syndrome kinases, DYRKs, reveal mechanisms of kinase activation and substrate recognition.
(2013) Structure 21
PubMed: 23665168 | PubMedCentral: PMC3677093 | DOI: 10.1016/j.str.2013.03.012
Table 1 Data Collection and Refinement Statistics DYRK1A-Inhibitor a DYRK1A-Inhibitor a -Peptide DYRK2 PDB ID code 2VX3 2WO6 3K2L Crystallization conditions 4% (v/v) PEG 300, 0.1 M Li 2 SO 4 ,... 0.1 M Tris, pH 8.5 0.2 M sodium formate, 20% (w/v) PEG 3350, 10% ethylene glycol 1.26 M (NH 4 ) 2 SO 4 , 0.2 M Li 2 SO 4 , 0.1 M Tris, pH 8.5 Space group C 2 P 6 5 P 4 2 2 1 2 No.
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