Primary Citation PubMed: 17869269
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Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.
(2010) BMC Bioinformatics 11
PubMed: 20438625 | PubMedCentral: PMC2879287 | DOI: 10.1186/1471-2105-11-225
We calculated also the PWMs of three members of the NF- κ B family: the p50 homodimer (PDB entry 1NFK ), p50RelB ( 2V2T ), and the p50p65 heterodimer ( 1VKX ).
Publication Year: 2010
Hyaline fibromatosis syndrome inducing mutations in the ectodomain of anthrax toxin receptor 2 can be rescued by proteasome inhibitors.
(2011) EMBO Mol Med 3
PubMed: 21328543 | PubMedCentral: PMC3377065 | DOI: 10.1002/emmm.201100124
We then used CDD (Marchler-Bauer et al, 2009 ) to gather a representative set of structures containing an Ig-like fold domain (2cxk, 2as5, 1vkx, 1imh, 1ttu, 1cyg, 1clu, 7cgt, 1qhp, 1uad, 2uzx, 1gji, 2... 2t, 1a3q, 2yrp, 1kcl and 1nfk), which were structurally superposed using Swiss-PdbViewer (Guex & Peitsch, 1997 ).
Publication Year: 2011
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