Citations in PubMed

Primary Citation PubMed: 17893204 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural basis for complement factor H linked age-related macular degeneration.

(2007) J Exp Med 204

PubMed: 17893204 | PubMedCentral: PMC2118454 | DOI: 10.1084/jem.20071069

FH modules for which structural data is available are represented as cartoons and semitransparent surfaces: SCR5 ( 28 ), SCR6–8 (PDB code 2UWN; this study), SCR15/16 (Protein Data Bank ID, 1HF... [reference 29 ]), SCR19/20 (PDB code 2G7I/2BZM [references 30 , 31 ]).

Data and coordinates have been deposited in the Protein Data Bank with identifiers 2UWN and 2V8E.

Publication Year: 2007

The central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module.

(2010) J Mol Biol 395

PubMed: 19835885 | PubMedCentral: PMC2806952 | DOI: 10.1016/j.jmb.2009.10.010

Discussion The structural biology of the N-terminal and C-terminal regions of fH that encompas the known binding sites for its principal protein and carbohydrate ligands, has been studied extensively;... the medium-resolution or high-resolution structures of all eight N-terminal CCPs have been experimentally determined {in fragments: fH1–2 [Protein Data Bank (PDB) ID 2RLP ], fH2–3 (PDB ID 2RLQ ), fH1–4 (PDB ID 2WII ), and fH5 and fH6–8 (PDB ID 2UWN )} by NMR or crystallography, as have structures of four of the C-terminal six modules [fH15–16 (PDB ID 1HFH ) and fH19–20 (PDB IDs 2BZM and 2G7I )].

Publication Year: 2010

Zinc binding to the Tyr402 and His402 allotypes of complement factor H: possible implications for age-related macular degeneration.

(2011) J Mol Biol 408

PubMed: 21396937 | PubMedCentral: PMC3092982 | DOI: 10.1016/j.jmb.2011.03.006

Given this outcome from both bioinformatics strategies, the crystal structure of SCR-6/8 (PDB code 2UWN ) was examined to see whether tetrahedral zinc binding sites were possible in SCR-6/8 dimers.

To form FH dimer structures, we docked the SCR-6/8 His402 crystal structure (PDB code 2UWN ) using four different docking approaches available as web servers including ClusPro ‡ , HEX § , PatchDock || , and RosettaDock ¶ .

Table 2 The most likely zinc interaction ligands in FH SCR-6/8 and three protein benchmarks FH SCR-6/8 (PDB code 2UWN) Human interferon β (PDB code 1AU1) Complex of human growth hormone and prolactin (PDB code 1BP3) Archaeal cytochrome P450 (PDB code 1F4T) Top 3 Glu359 Glu42 His18 a Asp52 His360 His93 a Glu174 a His340 His371 His121 a Asp387 a Glu342 Top 5 Asp370 Glu85 His21 Asp42 Asp485 His131 His388 a His178 a Top 10 His332 Glu81 Glu56 Glu48 His417 His97 a Asp171 Asp52 Glu462 Glu103 Glu245 Glu139 a Glu487 Glu292 Glu274 Asp497 Glu345 Asp294 a The original ligands in the three benchmarked structures 1AU1 , 1BP3 , and 1F4T .

Publication Year: 2011