Citations in PubMed

Primary Citation PubMed: 2769760 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Will widgets and semantic tagging change computational biology?

(2010) PLoS Comput Biol 6

PubMed: 20195550 | PubMedCentral: PMC2829027 | DOI: 10.1371/journal.pcbi.1000673

The menu tag tied to entry 2tmv , a specific structure in the PDB, brings up a menu of options associated with access to that entry, for example display the sequence of the entry, display a summary pa... e from the PDB describing the structure, and so on.

Publication Year: 2010


4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera.

(2010) J Struct Biol 171

PubMed: 20558300 | PubMedCentral: PMC2939825 | DOI: 10.1016/j.jsb.2010.06.011

Atomic coordinates 2TMV (X-ray fibre structure) and 20M3 (cryo-EM structure) were docked into the cryo-EM density using Chimera ( Goddard et al., 2007 ).

Using visual inspection and cross-correlation coefficients (the cc value was 14% lower for 2TMV compared to 2OM3) as guides it was obvious that 2OM3, the atomic coordinates generated from the previous cryo-EM study, gave a better fit to the density ( Fig. 2 ; only 2OM3 fit shown; for a comparison of the X-ray fibre structure and the previous cryo-EM structure see Sachse et al., 2007 ; Supplementary Fig. 2 ).

3.4 Atomic structure fitting and refinement The 2TMV and 2OM3 structures were docked into the final map using Chimera ( Goddard et al., 2007 ).

Publication Year: 2010