Citations in PubMed

PubMed ID is not available.

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets.

(2007) BMC Bioinformatics 8

PubMed: 17662112 | PubMedCentral: PMC2034607 | DOI: 10.1186/1471-2105-8-270

PDB ID a 20Cl OS1 b 20Cl OS2 6Cl OS2 4Cl OS2 Lu c Bastolla c 1AVZ 73 35 67 100 54 40 1BGS 1 65 62 39 16 1 1BRC 76 37 41 31 5 70 1CGI 56 1 1 1 1 18 1DFJ 100 100 100 100 78 100 1FSS 24 1 1 1 1 1 1UGH 11... 10 20 10 10 71 1WQ1 99 100 100 100 97 98 2PCC 20 72 82 79 25 23 2SIC 17 48 56 17 14 96 5CHA - 2OVO 6 7 3 2 2 3 2PTN - 4PTI 5 9 9 33 4 10 1SUP - 2CI2 4 4 4 4 5 9 1A2P - 1A19 31 58 52 27 20 17 1CHG - 1HPT 2 7 4 6 2 4 T04 9 8 10 11 11 1 T05 64 61 62 62 60 60 T06 2 3 3 1 4 3 T07 58 63 62 56 58 64 T08 84 52 68 96 136 145 T09 165 162 164 165 159 164 T11 1 1 2 1 1 1 T12 9 5 6 2 1 5 T13 194 176 179 175 174 175 T14 68 121 91 125 18 43 T15 12 3 4 7 1 1 T18 25 8 7 1 2 4 T19 3 38 22 1 37 6 Our energy function was more successful with the Vakser set, with one failure and four successes (native structure among the top ten).

Publication Year: 2007


Discovery of a distinct superfamily of Kunitz-type toxin (KTT) from tarantulas.

(2008) PLoS One 3

PubMed: 18923708 | PubMedCentral: PMC2561067 | DOI: 10.1371/journal.pone.0003414

Sequence comparison and modeling The structural coordinates of DTX-K (PDB: 1DTK), BPTI (PDB: 1PIT) and typsin (PDB: 2PTN) were extracted from the PDB database.

Publication Year: 2008


Generating triangulated macromolecular surfaces by Euclidean Distance Transform.

(2009) PLoS One 4

PubMed: 19956577 | PubMedCentral: PMC2779860 | DOI: 10.1371/journal.pone.0008140

of cavities/cavity volume (in Å 3 ) EDTSurf LSMS MSMS 2act 218 14/533.00 16/514.66 18/573.858 2cha 248 7/347.44 19/529.91 20/587.81 2lyz 129 5/220.76 6/190.47 11/274.44 2ptn 230 7/411.29 14/60... .94 20/680.45 5mbn 154 4/168.41 8/298.52 13/293.94 8tln 318 14/441.75 29/642.06 42/942.91 In Table 4 , we calculate the volumes of seven cavities in the disordered domain of trypsinogen (PDB ID: 2ptn).

Publication Year: 2009


A series of PDB related databases for everyday needs.

(2011) Nucleic Acids Res 39

PubMed: 21071423 | PubMedCentral: PMC3013697 | DOI: 10.1093/nar/gkq1105

Example of PDBFINDER2 visualization options [2ptn; ( 43 )].

Publication Year: 2011


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4418572

Computational Details Initial Structure Construction Initial structure of trypsin was taken from Protein Data Bank (PDB)[ 37 ] ( www.rcsb.org ), i.e., 2PTN with 1.55 Å resolution[ 38 ].

Publication Year: 2015