Primary Citation PubMed: 15299346
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Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase.
(2008) Nucleic Acids Res 36
PubMed: 18463139 | PubMedCentral: PMC2441801 | DOI: 10.1093/nar/gkn212
( A ) dCK (PDB entry 2NO1), ( B ) TMPK (PDB entry 1E2D), ( C ) UMP/CMPK (PDB entry 2UKD), ( D ) NADH-bound liver alcohol dehydrogenase [PDB entry 2OHX ( 38 )], ( E ) hPGK C-domain and ( F ) hPGK N-dom... in.
Publication Year: 2008
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate.
(2008) BMC Bioinformatics 9 Suppl 9
PubMed: 18793461 | PubMedCentral: PMC2537567 | DOI: 10.1186/1471-2105-9-S9-S16
Both molecules of NAD shown are from an alcohol dehydrogenase structure [PDB: 2OHX ][ 16 ].
One example is an X-ray crystal structure of alcohol dehydrogenase [PDB: 2OHX ] [ 16 ].
Figure 2 NAD molecules from X-ray crystal structure 2OHX .
Interacting with the biomolecular solvent accessible surface via a haptic feedback device.
(2009) BMC Struct Biol 9
PubMed: 19860901 | PubMedCentral: PMC2774689 | DOI: 10.1186/1472-6807-9-69
The other structure analysed was a closed form of LADH bound to NAD (PDB: 2OHX ) [ 13 ].
Publication Year: 2009
On the evolutionary conservation of hydrogen bonds made by buried polar amino acids: the hidden joists, braces and trusses of protein architecture.
(2010) BMC Evol Biol 10
PubMed: 20513243 | PubMedCentral: PMC2892493 | DOI: 10.1186/1471-2148-10-161
I) Cysteine hydrogen bonding back to N-terminal residues in the alcohol dehydrogenase family [PDB: 2ohx ].
Two examples of aspartates hydrogen bonding back to N-terminal residues as well as to coils in the C) alcohol dehydrogenases [PDB: 2ohx ] and D) matrix metalloproteinases [PDB: 1hfc ].
Examples of coils that are supported by hydrogen bonds from polar residues at the end of central strands, including A) an aspartate in the aldehyde oxidase and xanthine dehydrogenases (domains 3&4) [PDB: 1n62 ], two glutamates in B) the alcohol dehydrogenases [PDB: 2ohx ] and C) the isocitrate and isopropylmalate dehydrogenases [PDB: 1cnz ] and D) an arginine in the serine proteinase inhibitor family [PDB: 1hle ].
Two examples of arginines forming hydrogen bonds to polyproline helices in A) the α/β hydrolases [PDB: 2bce ] and B) the alcohol dehydrogenases - polyproline interaction on the right [PDB: 2ohx ].
Publication Year: 2010
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