Primary Citation PubMed: 23485336
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HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes.
(2014) Retrovirology 11
PubMed: 25253273 | PubMedCentral: PMC4189171 | DOI: 10.1186/s12977-014-0079-7
PDB data of Gag protein structures: matrix, 1HIW; capsid, 3NTE; p2, 1U57; nucleocapsid, 2M3Z; p6, 2C55.
Publication Year: 2014
Functional conservation of HIV-1 Gag: implications for rational drug design.
(2013) Retrovirology 10
PubMed: 24176092 | PubMedCentral: PMC4228425 | DOI: 10.1186/1742-4690-10-126
PDB data of capsid inhibitors: 2BUO, 2L6E, 2XDE, 4E91, 4E92, 2JPR and 4INB, each of which was superimposed to 3H4E using PDBs of 5 drug binding pockets: pocket 1, 2XDE; pocket 2, 4INB; pocket 3, 2BUO;... pocket 4, 4E91; pocket 5, 2M3Z.
PDB entries of gag proteins: matrix, 1HIW; capsid, 3NTE; p2, 1U57; nucleocapsid, 2M3Z; p6, 2C55.
Figure (C) shows the structural complex of nucleocapsid and RNA (left, PDB: 1A1T) and the structural complex of nucleocapsid and inhibitor CAA (right, PDB: 2M3Z).
Publication Year: 2013
A new ensemble coevolution system for detecting HIV-1 protein coevolution.
(2015) Biol Direct 10
PubMed: 25564011 | PubMedCentral: PMC4332441 | DOI: 10.1186/s13062-014-0031-8
PDB code: 1HIW (matrix), 3NTE (capsid), 1U57 (p2), 2M3Z (nucleocapsid), 2C55 (p6).
Publication Year: 2015
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