Citations in PubMed

Primary Citation PubMed: 4856347 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Generating triangulated macromolecular surfaces by Euclidean Distance Transform.

(2009) PLoS One 4

PubMed: 19956577 | PubMedCentral: PMC2779860 | DOI: 10.1371/journal.pone.0008140

of cavities/cavity volume (in Å 3 ) EDTSurf LSMS MSMS 2act 218 14/533.00 16/514.66 18/573.858 2cha 248 7/347.44 19/529.91 20/587.81 2lyz 129 5/220.76 6/190.47 11/274.44 2ptn 230 7/411.29 14/60... .94 20/680.45 5mbn 154 4/168.41 8/298.52 13/293.94 8tln 318 14/441.75 29/642.06 42/942.91 In Table 4 , we calculate the volumes of seven cavities in the disordered domain of trypsinogen (PDB ID: 2ptn).

Publication Year: 2009


Experimental phasing using zinc anomalous scattering.

(2012) Acta Crystallogr D Biol Crystallogr 68

PubMed: 22948927 | PubMedCentral: PMC3489106 | DOI: 10.1107/S0907444912024420

The root-mean-square deviation for all atoms between zinc-bound lysozyme and zinc-free lysozyme (PDB entry 2lyz ; Diamond, 1974 ▶ ) was only 0.85 Å, indicating that zinc bindin... had no effect on the structure.

Publication Year: 2012


Protein Denaturation with Guanidinium: A 2D-IR Study.

(2013) J Phys Chem Lett 4

PubMed: 24163724 | PubMedCentral: PMC3805561 | DOI: 10.1021/jz401754b

Lysozyme (PDB ID 2LYZ, 129 residues) shows 41% helical and 10% β-sheet secondary structure.

Publication Year: 2013


Direct phase selection of initial phases from single-wavelength anomalous dispersion (SAD) for the improvement of electron density and ab initio structure determination.

(2014) Acta Crystallogr D Biol Crystallogr 70

PubMed: 25195747 | PubMedCentral: PMC4157445 | DOI: 10.1107/S1399004714013868

These initial structural models were obtained from the PDB (PDB entries 1gyo for cytochrome c 3 , 2bn3 for insulin and 2lyz for lysozyme) and our laboratory (lectin) and were refined with our experime... tal data with REFMAC 5 (Murshudov et al. , 2011 ▶ ; Winn et al. , 2011 ▶ ) and visualized or adjusted with Coot (Emsley & Cowtan, 2004 ▶ ).

Publication Year: 2014


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4388261

The initial crystal structure of HEWL at 0.1 MPa (atmospheric pressure) was solved using MOLREP (Vagin & Teplyakov, 2010 ▶ ) with PDB entry 2lyz (Diamond, 1974 ▶ ) as t... e search model.

Publication Year: 2015