Primary Citation PubMed: 4856347
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Generating triangulated macromolecular surfaces by Euclidean Distance Transform.
(2009) PLoS One 4
PubMed: 19956577 | PubMedCentral: PMC2779860 | DOI: 10.1371/journal.pone.0008140
of cavities/cavity volume (in Å 3 ) EDTSurf LSMS MSMS 2act 218 14/533.00 16/514.66 18/573.858 2cha 248 7/347.44 19/529.91 20/587.81 2lyz 129 5/220.76 6/190.47 11/274.44 2ptn 230 7/411.29 14/60... .94 20/680.45 5mbn 154 4/168.41 8/298.52 13/293.94 8tln 318 14/441.75 29/642.06 42/942.91 In Table 4 , we calculate the volumes of seven cavities in the disordered domain of trypsinogen (PDB ID: 2ptn).
Publication Year: 2009
Experimental phasing using zinc anomalous scattering.
(2012) Acta Crystallogr D Biol Crystallogr 68
PubMed: 22948927 | PubMedCentral: PMC3489106 | DOI: 10.1107/S0907444912024420
The root-mean-square deviation for all atoms between zinc-bound lysozyme and zinc-free lysozyme (PDB entry 2lyz ; Diamond, 1974 ▶ ) was only 0.85 Å, indicating that zinc bindin... had no effect on the structure.
Publication Year: 2012
Protein Denaturation with Guanidinium: A 2D-IR Study.
(2013) J Phys Chem Lett 4
PubMed: 24163724 | PubMedCentral: PMC3805561 | DOI: 10.1021/jz401754b
Lysozyme (PDB ID 2LYZ, 129 residues) shows 41% helical and 10% β-sheet secondary structure.
Publication Year: 2013
Direct phase selection of initial phases from single-wavelength anomalous dispersion (SAD) for the improvement of electron density and ab initio structure determination.
(2014) Acta Crystallogr D Biol Crystallogr 70
PubMed: 25195747 | PubMedCentral: PMC4157445 | DOI: 10.1107/S1399004714013868
These initial structural models were obtained from the PDB (PDB entries 1gyo for cytochrome c 3 , 2bn3 for insulin and 2lyz for lysozyme) and our laboratory (lectin) and were refined with our experime... tal data with REFMAC 5 (Murshudov et al. , 2011 ▶ ; Winn et al. , 2011 ▶ ) and visualized or adjusted with Coot (Emsley & Cowtan, 2004 ▶ ).
Publication Year: 2014
PubMed ID is not available.
Published in 2015
The initial crystal structure of HEWL at 0.1 MPa (atmospheric pressure) was solved using MOLREP (Vagin & Teplyakov, 2010 ▶ ) with PDB entry 2lyz (Diamond, 1974 ▶ ) as t... e search model.
Publication Year: 2015
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