Citations in PubMed

Primary Citation PubMed: 22373916 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural and functional characterization of interactions involving the Tfb1 subunit of TFIIH and the NER factor Rad2.

(2012) Nucleic Acids Res 40

PubMed: 22373916 | PubMedCentral: PMC3384317 | DOI: 10.1093/nar/gks194

( a–c ) Ribbon diagrams of the lowest energy structures of the Rad2 642–690 –Tfb1PH (a; PDB code 2LOX), the p53TAD2–Tfb1PH (b; PDB code 2GS0) and the TFIIEαCTD&... x02013;p62PH (c; PDB code 2RNR) complexes.


The structure of the Rad2 642–690 –Tfb1PH complex (PDB code 2LOX) is well defined by the NMR data ( Table 1 ).

( a ) Stereo view of the 20 lowest-energy structures of the complex between Tfb1PH (blue) and Rad2 642–690 (yellow; PDB code 2LOX).

Publication Year: 2012

Reprogramming resistant genes: in-depth comparison of gene expressions among iPS, ES, and somatic cells.

(2013) Front Physiol 4

PubMed: 23386832 | PubMedCentral: PMC3558704 | DOI: 10.3389/fphys.2013.00007

Materials and methods Transcriptome data processing In this study we compared transcriptional profiles from 13 iPS cell lines from 8 published reports hiPS1_8 (Masaki et al., 2008 ) hiPS2_4 (Masaki et... al., 2008 ), hiPS3_2 (Masaki et al., 2008 ), BJiPS12 (Maherali et al., 2008 ), p-iPS01 (Kim et al., 2009 ), rv-iPS01 (Kim et al., 2009 ), iPS-PDB-1lox (Soldner et al., 2009 ), iPS-PDB-2lox (Soldner et al., 2009 ), Hips7 (Lowry et al., 2008 ), hiPSC2 (Lowry et al., 2008 ), hiPS20B1 (Takahashi et al., 2007 ), hAFF-(4PU)-iPS9 (Zhao et al., 2008 ), KiPS4F2 (Aasen et al., 2008 ).

We have following cell lines: 2 virus-free cell lines, such as p-iPS01 (249 genes), iPS-PDB-lox1 (242 genes); 8 retrovirus cell lines, such as, hiPS3_2 (673 genes), hiPS2_4 (478genes), hiPS1_8 (440 genes), hiPS20B1 (112 genes), Hips7 (519 genes), hiPSC2 (469 genes), rv-iPS01 (185 genes), KiPS4F2 (506 genes), and 3 lentivirus cell lines, such as BJiPS12 (62 genes), hAFF-4PU-iPS9 (134 genes), and iPS-PDB-2lox (157 genes).

The lowest number of down-regulated RRGs was found in following iPSC lines: BJiPS12 (62 genes), hiPS20B1 (112 genes), hAFF-4PU-iPS9 (134 genes), and iPS-PDB-2lox (157 genes), where last three cell lines are derived through the lentiviral transduction.

Cre-recombinase excisable virus induced cell line iPS-PDB-lox1 (242 genes) and virus-free cell p-iPS01 (249 genes) had comparatively low number of down-regulated genes, but still higher than lentivirus induced cells BJiPS12 (62 genes), hAFF-4PU-iPS9 (134 genes), and iPS-PDB-2lox (157 genes) (Figure 3 ).

Publication Year: 2013