Citations in PubMed

Primary Citation PubMed: 18227510 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Discovery of small molecule cancer drugs: successes, challenges and opportunities.

(2012) Mol Oncol 6

PubMed: 22440008 | PubMedCentral: PMC3476506 | DOI: 10.1016/j.molonc.2012.02.004

Right-hand side: Crystal structure of neratinib bound to EGFR (PDB code: 2JIV).

Publication Year: 2012


Centrosomal kinase Nek2 cooperates with oncogenic pathways to promote metastasis.

(2013) Oncogenesis 2

PubMed: 24018644 | PubMedCentral: PMC3816224 | DOI: 10.1038/oncsis.2013.34

Figure 6 ( a ) Superimposition of Nek2 (PDB ID: 2JAV), EGFR (PDB ID: 2JIV) and HER2 (PDB ID: 3PP0) kinases.

While the sequence alignments of Nek2 (PDB ID: 2JAV) 14 with that of EGFR (PDB ID: 2JIV) 28 and HER2 (PDB ID: 3PP0) 29 revealed only 22% sequence identity (45% sequence similarity) and 27% sequence identity (49% sequence similarity), respectively, the tertiary folds were remarkably similar ( Figure 6a and Supplementary Figure S1 ).

Publication Year: 2013


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4517520

Table 2 General information about the mutations of the 42 HER family protein kinase domain PDB ID a TKI-sensitive TKI-resistant Protein conformation G719S LREA L858R T790M DFG-motif αC positio... (Å) b EGFR  4LQM − L––– + − DFG-in 7.690  4LRM − − − − DFG-in 8.028  4LL0 − − + + DFG-in 9.460  4LI5 − − − − DFG-in 8.266  4JQ7 − − − − DFG-in 8.843  4JQ8 − − − − DFG-in 8.071  4JR3 − − − DFG-in 7.903  4JRV − L––– − − DFG-in 7.929  3W32 − − − − DFG-out 12.717  3W33 − − − − DFG-out 12.846  3W2O − − + + DFG-in 8.065  3W2P − − + + DFG-in 8.109  3W2Q − − + + DFG-in 8.394  3W2R − − + + DFG-out 12.056  4I22 − LRKA + + DFG-out 12.384  4I23 − L––A − − DFG-in 7.750  4I24 − L––A − + DFG-out 12.399  4HJO − − − − DFG-out 12.327  4G5J − K––– − − DFG-in 7.807  4G5P − − − + DFG-in 8.786  3UG2 − –––– − + DFG-in 8.308  3POZ − LA–– − − DFG-out 12.430  3LZB − − − − DFG-out 11.673  3IKA − − − + DFG-in 9.314  2RGP − LR–K − − DFG-out 12.098  3BEL − − − − DFG-out 12.033  2JIU − − − + DFG-in 8.868  2JIV − − − + DFG-out-like 12.634  2ITO + − − − DFG-in 7.446  2ITP + − − − DFG-in 7.673  2ITT − − + − DFG-in 7.682  2ITY − − − − DFG-in 7.481  2ITZ − − + − DFG-in 7.717  2J6M − − − − DFG-in 7.647  2J5E − − − − DFG-in 7.394  2J5F − − − − DFG-in 7.642  1XKK − LREK − − DFG-out 11.967  1M17 − − − − DFG-in 8.037 HER2  3RCD − LR–– − − DFG-out 10.997 HER3  4OTW − IEDK L858V − DFG-out 13.635 HER4  2R4B − LN–– − − DFG-out 11.299  3BBT − LK–– − − DFG-out 12.537 Notes: a All the HER protein kinase crystal complexes collected from the PDB (up to 05/28/2014); b The distance between the αC carbon atoms of D xDFG.81 and E αC.24 .

Publication Year: 2015