Primary Citation PubMed: 17495531
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Intrinsic disorder mediates the diverse regulatory functions of the Cdk inhibitor p21.
(2011) Nat Chem Biol 7
PubMed: 21358637 | PubMedCentral: PMC3124363 | DOI: 10.1038/nchembio.536
Cdk/cyclin complex Distance (Å) 1 PDB ID Cdk2/cyclin A 36.2 1JST 17 Cdk2/cyclin B1 36.5 2JGZ 36 Cdk2/cyclin E1 35.8 1W98 37 Cdk4/cyclin D1 34.0 2W96 38 Cdk4/cyclin D3 34.0 3G33 39 1 Distances ... ere measured between the C α atoms of a conserved Val residue in the Cdks (Val 30 in Cdk2 and Val 32 in Cdk4) and a conserved Leu residue in the cyclins [Leu 255 in cyclin A, Leu 190 (isoform 1) in cyclin E1, Leu 246 in cyclin B, and Leu 101 in cyclins D1 and D3].
Publication Year: 2011
A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins.
(2012) PLoS Comput Biol 8
PubMed: 23093928 | PubMedCentral: PMC3475653 | DOI: 10.1371/journal.pcbi.1002738
For the case of CycB, it was modeled by applying JOY and MODELLER using both human Cyclin A (PDB: 3DOG, chain B, sequence identity shared with CycB: 36%) and human cyclin B (PDB: 2JGZ, chain B, sequen... e identity: 40%) as templates ( Figure S8A ).
(A) The alignment of CycB sequence and the template structures PDB: 2JGZ and 3DOG.
Publication Year: 2012
Substituted 4-(thiazol-5-yl)-2-(phenylamino)pyrimidines are highly active CDK9 inhibitors: synthesis, X-ray crystal structures, structure-activity relationship, and anticancer activities.
(2013) J Med Chem 56
PubMed: 23301767 | PubMedCentral: PMC3579313 | DOI: 10.1021/jm301475f
By contrast, the conformation of the glycine rich loop in CDK2/cyclin A appears to be relatively unaltered on inhibitor binding (PDB 2JGZ).
Publication Year: 2013
PubMed ID is not available.
Published in 2014
Biological processes Protein CUG-residue Template structure (PDB accession code) # Amino acid sequence identity (%) QMEAN score * Protein translation LeuRS 919 T. termophilus isoleucyl-tRNA synthetats... (1JZQ) 34 0.29 Ras signaling Ras1 66 Human Ras (3K8Y) 67 0.76 Csc25 (GEF) 939; 1059 Human Sos1-Ras complex (1BKD) 32 0.60 Ira2 (GAP) 1312; 1383; 1397 Human Ras-GAP334 complex (1WQ1) 30 0.53 MAPK pathway Cek1 199 S. cerevisiae Fus3 (2B9F) 64 0.70 Cell cycle Clb2 301; 383 Human cyclin B1 (2B9R) 39 0.66 Cdc28 – Human Cdk2-Cyclin B1 complex (2JGZ) 67 0.77 # The selected experimental three-dimensional structures were used as templates in SWISS-MODEL ( http://swissmodel.expasy.org/ ) (Arnold et al., 2006 ) for calculating homology models of C. albicans proteins, from which secondary structure elements were inferred and used in sequence alignments shown in Figures 3A , 5A , 6A,D .
(C) Representation of the human cyclin B1-Cdk2 complex (Brown et al., 2007 , PDB accession code 2JGZ).
Human Cdk2 secondary structure elements (Brown et al., 2007 ; PDB accession code 2JGZ) are represented above the corresponding amino acid sequence (red cylinders, α-helices; yellow cylinders, 3 10 helices; blue arrows, β-sheets).
Publication Year: 2014
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.