Primary Citation PubMed: 17495531
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Intrinsic disorder mediates the diverse regulatory functions of the Cdk inhibitor p21.
(2011) Nat Chem Biol 7
PubMed: 21358637 | PubMedCentral: PMC3124363 | DOI: 10.1038/nchembio.536
Cdk/cyclin complex Distance (Å) 1 PDB ID Cdk2/cyclin A 36.2 1JST 17 Cdk2/cyclin B1 36.5 2JGZ 36 Cdk2/cyclin E1 35.8 1W98 37 Cdk4/cyclin D1 34.0 2W96 38 Cdk4/cyclin D3 34.0 3G33 39 1 Distances ... ere measured between the C α atoms of a conserved Val residue in the Cdks (Val 30 in Cdk2 and Val 32 in Cdk4) and a conserved Leu residue in the cyclins [Leu 255 in cyclin A, Leu 190 (isoform 1) in cyclin E1, Leu 246 in cyclin B, and Leu 101 in cyclins D1 and D3].
Publication Year: 2011
A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins.
(2012) PLoS Comput Biol 8
PubMed: 23093928 | PubMedCentral: PMC3475653 | DOI: 10.1371/journal.pcbi.1002738
For the case of CycB, it was modeled by applying JOY and MODELLER using both human Cyclin A (PDB: 3DOG, chain B, sequence identity shared with CycB: 36%) and human cyclin B (PDB: 2JGZ, chain B, sequen... e identity: 40%) as templates ( Figure S8A ).
(A) The alignment of CycB sequence and the template structures PDB: 2JGZ and 3DOG.
Publication Year: 2012
Substituted 4-(thiazol-5-yl)-2-(phenylamino)pyrimidines are highly active CDK9 inhibitors: synthesis, X-ray crystal structures, structure-activity relationship, and anticancer activities.
(2013) J Med Chem 56
PubMed: 23301767 | PubMedCentral: PMC3579313 | DOI: 10.1021/jm301475f
By contrast, the conformation of the glycine rich loop in CDK2/cyclin A appears to be relatively unaltered on inhibitor binding (PDB 2JGZ).
Publication Year: 2013
PubMed ID is not available.
Published in 2014
Biological processes Protein CUG-residue Template structure (PDB accession code) # Amino acid sequence identity (%) QMEAN score * Protein translation LeuRS 919 T. termophilus isoleucyl-tRNA synthetats... (1JZQ) 34 0.29 Ras signaling Ras1 66 Human Ras (3K8Y) 67 0.76 Csc25 (GEF) 939; 1059 Human Sos1-Ras complex (1BKD) 32 0.60 Ira2 (GAP) 1312; 1383; 1397 Human Ras-GAP334 complex (1WQ1) 30 0.53 MAPK pathway Cek1 199 S. cerevisiae Fus3 (2B9F) 64 0.70 Cell cycle Clb2 301; 383 Human cyclin B1 (2B9R) 39 0.66 Cdc28 – Human Cdk2-Cyclin B1 complex (2JGZ) 67 0.77 # The selected experimental three-dimensional structures were used as templates in SWISS-MODEL ( http://swissmodel.expasy.org/ ) (Arnold et al., 2006 ) for calculating homology models of C. albicans proteins, from which secondary structure elements were inferred and used in sequence alignments shown in Figures 3A , 5A , 6A,D .
(C) Representation of the human cyclin B1-Cdk2 complex (Brown et al., 2007 , PDB accession code 2JGZ).
Human Cdk2 secondary structure elements (Brown et al., 2007 ; PDB accession code 2JGZ) are represented above the corresponding amino acid sequence (red cylinders, α-helices; yellow cylinders, 3 10 helices; blue arrows, β-sheets).
Publication Year: 2014
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