Citations in PubMed

Primary Citation PubMed: 17380186 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Crystal structure of the S. solfataricus archaeal exosome reveals conformational flexibility in the RNA-binding ring.

(2010) PLoS One 5

PubMed: 20090900 | PubMedCentral: PMC2806925 | DOI: 10.1371/journal.pone.0008739

Only two of the three Rrp4 subunits can be correctly placed by molecular replacement in PHASER using the published Rrp4 structure (PDB code 2JE6) [30] , while attempting to position th... third subunit resulted in broken densities.

Conformation Flexibility Mainly Within the RNA-Binding Ring The catalytic ring in our S. solfataricus Rrp4-exosome crystal structure ( Fig. 1c ) is very similar to that of the catalytic mutant structure from the same organism (PDB code 2JE6) previously reported [30] .

Publication Year: 2010


DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking.

(2011) BMC Bioinformatics 12

PubMed: 21851628 | PubMedCentral: PMC3179970 | DOI: 10.1186/1471-2105-12-348

error) 2rkj 1y42 / 1y0q 5 4 -0.58 (0.576) 0.17 (0.697) -0.6 (0.566) 1 (0.000) 10 15 -0.25 (0.269) -0.11 (0.276) 0.34 (0.261) 0.31 (0.264) 20 87 0.09 (0.108) 0.21 (0.106) 0.06 (0.108) 0.51 (0.093) 2r8s... 2r8s / 1hr2 5 3 1 (0.000) 1 (0.000) -1 (0.000) -1 (0.000) 10 6 0.7 (0.357) 0.73 (0.342) -0.6 (0.400) -0.33 0.472) 20 13 0.72 (0.209) 0.64 (0.232) -0.47 (0.266) -0.43 (0.272) 1lng 1lng / 1z43 5 2 - - - - 10 18 0.1 (0.249) -0.15 (0.247) 0.1 (0.249) 0.14 (0.248) 20 48 0.73 (0.101) 0.71 (0.104) 0.4 (0.135) 0.53 (0.125) 2pxv 2pxv / 1cql 5 14 0.69 (0.209) 0.02 (0.289) 0.28 (0.277) -0.19 (0.283) 10 131 -0.04 (0.088) 0.02 (0.088) 0.14 (0.087) -0.03 (0.088) 20 948 -0.08 (0.032) -0.02 (0.033) 0.13 (0.032) 0.17 (0.032) 1e7k 2jnb / 1e7k 5 7 -0.08 (0.446) 0.09 (0.445) 0.6 (0.358) 0.11 (0.444) 10 46 0.31 (0.143) 0.39 (0.139) 0.26 (0.146) 0.2 (0.148) 20 938 0.19 (0.032) 0.17 (0.032) 0.14 (0.032) 0.17 (0.032) 1wpu 1wpv / 1wpu 5 125 0.63 (0.070) 0.67 (0.067) -0.08 (0.090) -0.3 (0.086) 10 227 0.42 (0.061) 0.34 (0.063) 0.02 (0.067) -0.4 (0.061) 20 1165 0.5 (0.025) 0.37 (0.027) 0.02 (0.029) -0.21(0.029) 3bso 1sh0 / 3bso 5 34 0.48 (0.155) 0.32 (0.167) -0.1 (0.176) -0.09 (0.176) 10 104 0.52 (0.085) 0.49 (0.086) -0.03 (0.099) -0.32 (0.094) 20 1212 0.42 (0.026) 0.41 (0.026) -0.21 (0.028) 0.09 (0.029) 2jea 2je6 / 2jea 5 35 0.16 (0.172) 0.22 (0.170) 0.34 (0.164) 0.44 (0.156) 10 440 0.3 (0.046) 0.21 (0.047) 0.29 (0.046) 0.13 (0.047) 20 3290 0.41 (0.016) 0.42 (0.016) 0.04 (0.017) 0.18 (0.017) 5 28 0.32 0.26 0.21 -0.01 Mean 10 123.4 0.26 0.23 0.06 -0.04 20 962.6 0.37 0.34 0.01 0.13 Correlation coefficients were calculated for scatter plots from Figure 6.

Publication Year: 2011


Crystal structure of human polynucleotide phosphorylase: insights into its domain function in RNA binding and degradation.

(2012) Nucleic Acids Res 40

PubMed: 22210891 | PubMedCentral: PMC3351181 | DOI: 10.1093/nar/gkr1281

( A ) The archaeal exosome (PDB entry 2JE6) has an S1 pore formed by the three S1 domains of Rrp4 (blue).

( B ) The crystal structures of human exosome (PDB: 2NN6) and S. solfataricus exosome (PDB: 2JE6) show that the active S. solfataricus exosome has a more constricted channel as compared to the inactive human exosome.

Publication Year: 2012


Structure determination of an 11-subunit exosome in complex with RNA by molecular replacement.

(2013) Acta Crystallogr D Biol Crystallogr 69

PubMed: 24189234 | PubMedCentral: PMC3817696 | DOI: 10.1107/S0907444913011438

( a ) Yeast Rrp44–Rrp41–Rrp45 ternary complex (PDB entry 2wp8 ; Bonneau et al. , 2009 ▶ ), human Exo-9 (PDB entry 2nn6 ; Liu et al. , 2006 ▶ ) and archaeal exosome (PDB... entry 2je6 ; Lorentzen et al. , 2007 ▶ ).

Publication Year: 2013


We're sorry, but a portion of the page could not be displayed.
The error has been logged and will be reviewed by the RCSB PDB.
If time permits, please submit a detail description of the issue on our Contact Us page.
We will try our best to quickly address the issue.