Citations in PubMed

Primary Citation PubMed: 18239682 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

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PDB ID Mentions in PubMed Central

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The scientific impact of the Structural Genomics Consortium: a protein family and ligand-centered approach to medically-relevant human proteins.

(2007) J Struct Funct Genomics 8

PubMed: 17932789 | PubMedCentral: PMC2140095 | DOI: 10.1007/s10969-007-9027-2

Cancer e Other-NAK STK10 2J7T 2.0 SU11274 Not known STE DAPK3 2J90 2.0 Pyridone 6 Cancer, Inflammation CAMK CAMK1G 2JAM 1.7 SU11652 Not known CAMK CAMK1D 2JC6 2.5 GSK inhibitor XIII Genetic CAMK a PAK... also deposited as an apo-structure in two different spacegroups: 2BVA, 2J01 b Structures with different inhibitors and substrate: PIM1: 2BIK, 2BZH,2BZI, 2BZJ, 2BZK, 2C3I, 2BIL, 2J2I; SLK: 2JA0 c CLK3 also deposited as phosphorylated protein: pdb-code: 2EXE.

Publication Year: 2007


Activation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites.

(2008) EMBO J 27

PubMed: 18239682 | PubMedCentral: PMC2239268 | DOI: 10.1038/emboj.2008.8

Atomic coordinates and structure factors have been deposited in the PDB, accession codes 2J51, 2UV2, 2JFL, 2JFM, 2J7T and 2J90.

Table 2 Dimer interfaces   SLK SLK-diP LOK a DAPK3 a CHK2 PDB code 2J51 2JFL 2J7T 2J90 2CN5 Dimer type (N/C) b C C C N C Interface-accessible surface area per monomer (ASA; Å 2 ) c 1735 2032 1730 1940 1335 % ASA c 11.5 13 11.5 12.9 8.5 Interface residues (atoms) c 48 (181) 55 (212) 46 (176) 56 (210) 39 (139) % Polar atoms in interface d 32 34 28 32 30 % Nonpolar atoms in interface d 68 66 72 68 70 Length/breadth of interface (Å) d 61/32 61/28 47/22 52/33 52/23 Salt bridges c 2 2 4 3 2 Direct hydrogen bonds c 18 29 23 21 14 a LOK and DAPK3 (molA) have incomplete activation loop regions due to disorder and the extent of the dimer interface is therefore likely to be under-represented by the values shown.

Table 1 Structural refinement and data collection Data collection SLK SLK-monoP SLK-Apo SLK-diP LOK DAPK3 PDB code 2J51 2UV2 2JFM 2JFL 2J7T 2J90 Ligand K00546 K00606 None K00546 K00593 K00225 Phosphorylation state observed None T183∼50% T183∼70% T183∼70%, S189 ∼30% None S50, T265 100% Spacegroup P 6 1 22 P 6 1 22 P 6 1 22 P 6 1 22 I 222 P 4 3 2 1 2 Cell dimensions (Å) a = b =101.2, c =177.2 a = b =101.3, c =176.5 a = b =102.1, c =177.0 a = b =101.37, c =177.2 a =49.2, b =112.9, c =133.8 a = b =95.8, c =150.9 α, β, γ 90, 90, 120 90, 90, 120 90, 90, 120 90, 90, 120 90, 90, 90 90, 90, 90 Resolution (Å) 2.1 2.3 2.85 2.2 2.0 2.0 Unique observations 32094 24390 13398 27969 25648 48089 Completeness a (%) 100 (100) 99.3 (95.2) 100 (100) 99.5 (97.3) 99.9 (99.8) 99.8 (100) Redundancy a 8.9 (8.9) 8.4 (6.0) 4.4 (4.5) 5.9 (4.1) 5.3 (5.3) 5.6 (5.6) R merge a 0.08 (0.81) 0.10 (0.86) 0.08 (0.76) 0.09 (0.71) 0.09 (0.82) 0.08 (0.67) I /σ I a 16 (2.7) 14.2 (2.1) 12.5 (2.0) 13 (2.0) 11.4 (2.3) 8.7 (2.0)               Refinement  Resolution (Å) 60–2.1 60–2.3 30–2.85 50–2.2 55–2.0 50–2.0  Reflections (R free ) 30437 (1589) 23095 (1232) 12654 (680) 26523 (1377) 24339 (1308) 45599 (2433)   R work / R free (%) 20/23.2 19.8/23.4 23.0/27.1 20.3/24.2 20.4/23.5 18.7/22.2  Atoms (P/L/W/O) b 2250/28/151/19 2249/29/148/26 2229/–/9/8 2274/28/146/24 2157/40/124/9 4242/46/329/19  B-factors (P/L/W/O) b (Å 2 ) 51/51/46/58 55/51/48/61 89/–/64/113 58/58/52/68 43/38/38/57 41/36/45/45  r.m.s.d bonds (Å) 0.013 0.011 0.013 0.012 0.010 0.009  r.m.s.d angles (deg) 1.54 1.282 1.375 1.548 1.236 1.147  Ramachandran c              Favoured (%) 97.6 97.2 94.0 97.2 98.6 98.1  Allowed (%) 100 100 99.6 100 100 100 a Values in brackets represent statistics for highest-resolution shells.

Publication Year: 2008


Molecular mechanism of Aurora A kinase autophosphorylation and its allosteric activation by TPX2.

(2014) Elife 3

PubMed: 24867643 | PubMedCentral: PMC4032492 | DOI: null

Pike ACW , Rellos P , Niesen FH , Turnbull A , Oliver AW , Parker SA , Turk BE , Pearl LH , Knapp S , 2008 , Crystal structure of human serine threonine kinase-10 bound to su11274 , http://www.pdb.org... pdb/explore/explore.do?structureId=2j7t , Publicly available at RCSB Protein Data Bank.

Publication Year: 2014