Citations in PubMed

Primary Citation PubMed: 16857941 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure.

(2009) PLoS Comput Biol 5

PubMed: 19609355 | PubMedCentral: PMC2704872 | DOI: 10.1371/journal.pcbi.1000440

(A) KirBac1.1 potassium channel (1p7b); (B) bovine aquaporin-1 (1j4n); (C) KcsA potassium channel (1k4c); (D) MthK calcium-gated potassium channel (1lnq); (E) CorA Mg 2+ transporter (2iub); (F... MscS voltage-modulated mechanosensitive channel (2oau); (G) ASIC1 acid-sensing ion channel (2qts); (H) SecYE-beta protein-conducting channel (2yxr); (I) Kv1.2 voltage-gated potassium channel (2a79); (J) sodium-potassium channel (2ahy); (K) Amt-1 ammonium channel (2b2f); (L) nicotinic acetylcholine receptor (2bg9).

Publication Year: 2009


Initial binding of ions to the interhelical loops of divalent ion transporter CorA: replica exchange molecular dynamics simulation study.

(2012) PLoS One 7

PubMed: 22952795 | PubMedCentral: PMC3431404 | DOI: 10.1371/journal.pone.0043872

The reference structure used is the Chain A of the crystal structure of CorA solved by Eshaghi et al. (PDB code: 2IUB) with the missing residues from Y311 to G326 (sequence: YGMNFEYMPELRWKWG).

Publication Year: 2012


Exploring the structure and function of Thermotoga maritima CorA reveals the mechanism of gating and ion selectivity in Co2+/Mg2+ transport.

(2013) Biochem J 451

PubMed: 23425532 | PubMedCentral: PMC3629940 | DOI: 10.1042/BJ20121745

The structure was solved by the molecular replacement method with PHASER [ 18 ] using the previously solved TmCorA structure (PDB code 2IUB) [ 9 ] as a search model.

The crystal structure (PDB code 2IUB) [ 9 ] revealed Co 2+ binding at the M1 site that is tightly co-ordinated by the carboxyl groups of Asp 89 and Asp 253 .

Publication Year: 2013


Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices.

(2013) BMC Bioinformatics 14

PubMed: 24112406 | PubMedCentral: PMC3854514 | DOI: 10.1186/1471-2105-14-304

Table 7 The list of all protein chains (PDB:Chain) included in the development set and the independent test set Development set Independent test set 1E7P:C 1LNQ:A 1YCE:A 2 F93:A 2PNO:A 2WIT:A ... B8C:A 3EH4:A 2XQ2:A 3MP7:A 1EYS:L 1ORQ:C 1YEW:C 2GFP:A 2Q67:A 2WSW:A 3CHX:A 3EHB:B 2XUT:A 3NYM:A 1EYS:M 1P7B:A 1YQ3:C 2GIF:A 2Q7R:A 2YVX:A 3CHX:B 3G5U:A 3KBC:A 3O0R:B 1FFT:A 1PV6:A 1YQ3:D 2IUB:A 2QJY:A 2Z73:A 3CIR:C 3GIA:A 3KCU:A 3O7P:A 1FFT:B 1PW4:A 1ZCD:A 2JLO:A 2R6G:F 2ZD9:A 3CIR:D 3H90:A 3KG2:A 3OE6:A 1FFT:C 1QLE:C 2A65:A 2NMR:A 2R6G:G 2ZJS:Y 3CN5:A 3H9V:A 3KJ6:A 3ORG:A 1FX8:A 1S5L:B 2AXT:A 2NQ2:A 2R9R:B 2ZW3:A 3D31:C 3HD6:A 3KP9:A 3P4W:A 1GZM:A 1S5L:C 2AXT:D 2NR9:A 2VL0:A 2ZXE:A 3DDL:A 3IJ4:A 3L1L:A 3P5N:A 1JB0:K 1S5L:Z 2BL2:A 2OAR:A 2VPZ:C 3A7K:A 3DHW:A 3JYC:A 3 M71:A 3PJZ:A 1JV6:A 1XIO:A 2C3E:A 2OAU:A 2WDV:C 3B4R:A 3E9J:C 3 K07:A 3MK7:A   1KPK:A 1Y4Z:C 2E75:B 2ONJ:A 2WDV:D 3B5D:A 3EFF:K 3K3F:A 3MK7:C   1KQG:C               3MKT:A   Calculation of relative accessible surface area from structures To calculate lipid exposure or exposed area of a structure, we used NACCESS program [ 19 , 29 ] with the probe radius set to 2.0 Å.

Publication Year: 2013