Citations in PubMed

Primary Citation PubMed: 17123957 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 5

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Vaccinia virus proteins A52 and B14 Share a Bcl-2-like fold but have evolved to inhibit NF-kappaB rather than apoptosis.

(2008) PLoS Pathog 4

PubMed: 18704168 | PubMedCentral: PMC2494871 | DOI: 10.1371/journal.ppat.1000128

VACV A52 (2vvw) VACV B14 (2vvy) VACV N1 (2i39) Myxoma virus M11 (2jbx) Murine gamma-herpesvirus 68 Bcl-2 like (3bl2) Mouse Bcl-x L (2bzw) Human Bid (2bid) VACV A52 (2vvw) – 1.91 (124) 1.96 (10... ) 2.46 (107) 2.49 (100) 2.72 (111) 2.84 (91) VACV B14 (2vvy) 21.8 – 2.33 (101) 2.46 (95) 2.55 (105) 2.79 (103) 2.51 (89) VACV N1 (2i39) 18.5 15.8 – 2.29 (101) 2.36 (97) 2.75 (103) 2.83 (84) Myxoma virus M11 (2jbx) 11.2 5.3 9.9 – 2.38 (105) 2.33 (109) 2.90 (83) Murine gamma-herpesvirus 68 Bcl-2 like (3bl2) 5.0 11.4 14.4 5.7 – 2.26 (112) 3.13 (95) Mouse Bcl-x L (2bzw) 3.6 8.7 8.7 11.0 20.5 – 2.84 (105) Human Bid (2bid) 6.6 6.7 13.1 9.6 10.5 10.5 – PDB IDs for the structures used in the comparisons are shown in parentheses.

Publication Year: 2008


A poxvirus Bcl-2-like gene family involved in regulation of host immune response: sequence similarity and evolutionary history.

(2010) Virol J 7

PubMed: 20230632 | PubMedCentral: PMC2907574 | DOI: 10.1186/1743-422X-7-59

Conserved residues in the multiple sequence alignment were mapped on the N1 structure (PDB:2I39).

Since a common fold is assumed for all families, the sequence information was placed in the context of one of the known three-dimensional structures, that of N1 (PDB:2I39) (Figure 1B ).

Predicted secondary structure is indicated below each block of sequences (orange: alpha-helix; blue: beta-sheet), except for A46 and N1, for which secondary structures of A52 (PDB:2VVW) and N1 (PDB:2I39), respectively, are shown.

Publication Year: 2010


Inhibition of apoptosis and NF-?B activation by vaccinia protein N1 occur via distinct binding surfaces and make different contributions to virulence.

(2011) PLoS Pathog 7

PubMed: 22194685 | PubMedCentral: PMC3240604 | DOI: 10.1371/journal.ppat.1002430

Structures of N1 mutants were solved by isomorphous difference fourier synthesis, using the high resolution structure of N1 (PDB ID 2I39) [8] as a starting model.

Publication Year: 2011


How vaccinia virus has evolved to subvert the host immune response.

(2011) J Struct Biol 175

PubMed: 21419849 | PubMedCentral: PMC3477310 | DOI: 10.1016/j.jsb.2011.03.010

Description References PDB ID Extracellular immunomodulators A41 Chemokine inhibitor Bahar et al. (2008) 2VGA CPXV vCCI Chemokine inhibitor Carfi et al. (1999) 1CQ3 Rabbitpox virus vCCI Chemokine inhi... itor (complex) Zhang et al. (2006) 2FIN ECTV vCCI Chemokine inhibitor Arnold and Fremont (2006) 2GRK CrmE TNF-α inhibitor Graham et al. (2007) 2UWI TPXV 2 MHC-like TNF-α inhibitor Yang et al. (2009) 3IT8 IL-18 BP Blocks IL-18 binding to IL-18R Krumm et al. (2008) 3F62 IFN-gamma BP Blocks IFNγ - binding to IFN-γR Nuara et al. (2008) 3BES A39 Semaphorin 7A mimic Liu et al. (2010) 3NVX 

 Intracellular immunomodulators N1 Bcl-2–like inhibitor of apoptosis and toll-like receptor signalling to NF-κB Cooray et al. (2007); Aoyagi et al. (2007) 2UXE 2I39 B14 Bcl-2–like inhibitor of NF-κB Graham et al. (2008) 2VVY A52 Bcl-2–like inhibitor of NF-κB Graham et al. (2008) 2VVW K7 Bcl-2–like inhibitor of NF-κB and IFN-β Oda et al. (2009) 3JRV F1 Bcl-2–like anti-apoptotic Kvansakul et al. (2008) 2VTY M11 Bcl-2–like anti-apoptotic Kvansakul et al. (2007) 2JBY K3 Inhibits PKR mediated phosphorylation of eIF2α Dar and Sicheri (2002) 1LUZ VH1 Dephosphorylates STAT-1, blocks expression of IFN induced genes (ISGs) Koksal et al. (2009) 3CM3 Structures highlighted in bold were determined as part of SPINE2-Complexes.

Publication Year: 2011


Vaccinia virus virulence factor N1 can be ubiquitylated on multiple lysine residues.

(2014) J Gen Virol 95

PubMed: 24914067 | PubMedCentral: PMC4135091 | DOI: 10.1099/vir.0.065664-0

Residue K117 was not resolved in the crystal structure (Protein Data Bank ID: 2I39).

Publication Year: 2014