Primary Citation PubMed: 16920713
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Molecular interaction of fenvalarate with actin.
(2011) Bioinformation 7
PubMed: 22125391 | PubMedCentral: PMC3218417 | DOI: null
Multiple Sequence Alignment : ClustalW [ 10 ] was used to align the amino acid sequences of actin from different organisms, actin sequence of Bos taurus (gi|157878210|pdb|1HLU|A) and Homo sapiens (gi|... 501885|ref|NP_001092.1) representing mammals and Drosophila melanogaster (gi|114794361|pdb|2HF4|A) and Helicoverpa armigera (gi|1296534|emb|CAA66219.1) from insects were compared.
Actin Structure : The coordinates of crystal structure of monomeric actin in its ATP-Bound State of Drosophila melanogaster (PDB ID: 2HF4) and Structure of Bovine Beta-Actin-Profilin Complex with Actin Bound ATP Phosphates Solvent Accessible of Bos taurus (PDB ID: 1HLU) were obtained from the Protein Data Bank.
To evaluate the accuracy of AutoDock 4.0 as an appropriate docking tool for the present purpose, the co-crystallized ligand (ATP for 2HF4 and 1HLU respectively) were re-docked within the inhibitor binding cavity of β-actin as reference.
Publication Year: 2011
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