Primary Citation PubMed: 16901787
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Modular organization and combinatorial energetics of proline-tyrosine nuclear localization signals.
(2008) PLoS Biol 6
PubMed: 18532879 | PubMedCentral: PMC2408616 | DOI: 10.1371/journal.pbio.0060137
(B) Interactions between Kapβ2 (pink) and the N-terminal hydrophobic motif of hnRNP A1 (yellow) (PDB ID 2H4M) drawn with PYMOL [ 67 ].
Publication Year: 2008
FUS-NLS/Transportin 1 complex structure provides insights into the nuclear targeting mechanism of FUS and the implications in ALS.
(2012) PLoS One 7
PubMed: 23056579 | PubMedCentral: PMC3466232 | DOI: 10.1371/journal.pone.0047056
(C) The superimposition of residues 508–526 of FUS-NLS (yellow; PDB code: 4FQ3) with the corresponding regions from hnRNP A1-NLS (blue; PDB code: 2H4M), hnRNP D-NLS (grey; PDB code: 2Z5N), hnR... P M-NLS (magenta; PDB code: 2OT8), and TAP-NLS (cyan; PDB code: 2Z5K).
Figure S2 Structural properties of the PY fragments of the FUS-NLS (region I) and the other PY-NLS’s. (A) Structural alignment of the PY fragments of the FUS-NLS (yellow; PDB code 4FQ3), hnRNP A1-NLS (blue; PDB code 2H4M), hnRNP D-NLS (grey; PDB code 2Z5N), hnRNP M-NLS (magenta; PDB code 2OT8), and TAP-NLS (cyan; PDB code 2Z5K).
When the Trn1 structure determined in this study (PDB code: 4FQ3) was superimposed onto that in the Trn1/hnRNP A1-NLS, Trn1/hnRNP D-NLS, Trn1/hnRNP M-NLS and Trn1/TAP-NLS complexes (PDB codes: 2H4M, 2Z5N, 2OT8 and 2Z5K)  –  , the atomic r.m.s.d. values are 6.05 Å, 3.15 Å, 3.62 Å and 3.31 Å, respectively.
Several structures of Trn1 in complex with the PY NLS from proteins such as hnRNP A1-NLS (PDB code: 2H4M  ), hnRNP M-NLS (PDB code: 2OT8  ), hnRNP D-NLS and TAP-NLS (PDB codes: 2Z5N and 2Z5K  ) have been determined.
Figure S2A shows the superimposition of region I (E523–R524–P525–Y526, the PY motif) of FUS-NLS with the corresponding motif in hnRNP D-NLS (Y352–K353–P354–Y355; PDB code: 2Z5N), hnRNP M-NLS (F61–E62–P63–Y64; PDB code: 2OT8), hnRNP A1-NLS (S286–G287–P288–Y289; PDB code: 2H4M) and TAP-NLS (Y72–N73–P74–Y75; PDB code: 2Z5K).
Publication Year: 2012
Structure and function of cohesin's Scc3/SA regulatory subunit.
(2014) FEBS Lett 588
PubMed: 25171859 | PubMedCentral: PMC4175184 | DOI: 10.1016/j.febslet.2014.08.015
Another example from a long list of possible partial structural alignments is transportin 1 (PDB 2H4M , Fig. 1-fig.
Publication Year: 2014
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