Primary Citation PubMed: 14711308
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Statistical discovery of site inter-dependencies in sub-molecular hierarchical protein structuring.
(2012) EURASIP J Bioinform Syst Biol 2012
PubMed: 22793672 | PubMedCentral: PMC3524763 | DOI: 10.1186/1687-4153-2012-8
To gain some understanding into these short branches, sample third-order clusters from branches A to F were examined individually within the context of the solved transthyretin structures available in... the Protein Data Bank, pdb 2F7I, and pdb 1OO2 [ 51 - 54 ].
Potent inhibition of amyloidogenesis J Med Chem 2004 47 355 374 10.1021/jm030347n 14711308 Adamski-Werner SL Palaninathan SK Sacchettini JC Kelly JA 2F7I structure for human transthyretin http://www.rcsb.org/pdb/explore/explore.do?structureId=2F7I Folli C Pasquato N Ramazzina I Battistutta R Zanotti G Berni R Distinctive binding and structural properties of piscine transthyretin FEBS Lett 2003 555 279 284 10.1016/S0014-5793(03)01248-1 14644428 Folli C Pasquato N Ramazzina I Battistutta R Zannotti G Berni R 1OO2 Structure of piscine transthyretin http://www.rcsb.org/pdb/explore/explore.do?structureId=1oo2 French M Swanson K Shih SC Radhakrishnan I Hicke L Identification and characterization of modular domains that bind ubiquitin Methods Enzymol 2005 399 135 157 16338353 Pfam (Wellcome Trust Sanger Institute) http://pfam.sanger.ac.uk/family/PF00240 .
Publication Year: 2012
Sulfated metabolites of polychlorinated biphenyls are high-affinity ligands for the thyroid hormone transport protein transthyretin.
(2013) Environ Health Perspect 121
PubMed: 23584369 | PubMedCentral: PMC3672920 | DOI: 10.1289/ehp.1206198
Using PDB no. 2F7I as the receptor model, we were able to dock all five PCB sulfates into the T 4 binding site ( Figure 3B–F ).
From the Protein Data Bank (PDB; http://www.wwpdb.org/ ), we selected the crystal structure complex of TTR with bound 2,´6´-difluorobiphenyl-4-carboxylic acid (PDB no. 2F7I) to constitute the receptor model for human TTR.
We initially selected three TTR crystal structure complexes with different bound ligands (PDB no. 2ROX, 2G9K, and 2F7I) from the PDB to constitute the receptor model for TTR.
Following extraction of the ligands and subsequent docking of the extracted ligands into the generated protomol, the closest match was obtained for the complex of 2´,6´-difluorobiphenyl-4-carboxylic acid and TTR (PDB no. 2F7I).
Publication Year: 2013
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