Primary Citation PubMed: 16707497
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Determinants of protein function revealed by combinatorial entropy optimization.
(2007) Genome Biol 8
PubMed: 17976239 | PubMedCentral: PMC2258190 | DOI: 10.1186/gb-2007-8-11-r232
Coordinates from data set 2cci of the Protein Data Bank.
Publication Year: 2007
Design principles underpinning the regulatory diversity of protein kinases.
(2012) Philos Trans R Soc Lond B Biol Sci 367
PubMed: 22889905 | PubMedCentral: PMC3415841 | DOI: 10.1098/rstb.2012.0015
The structure was generated by modelling the CDK substrate (2CCI) [ 70 ] onto the substrate-binding pocket of ERK2 (2ERK) [ 71 ].
Publication Year: 2012
Capturing cooperative interactions with the PSI-MI format.
(2013) Database (Oxford) 2013
PubMed: 24067240 | PubMedCentral: PMC3782717 | DOI: 10.1093/database/bat066
Crystal structure of Cdc6 peptide bound to the active Cyclin A-Cdk2 complex (PDB:2CCI) ( 71 ), showing Cdc6 (green), Cyclin A (red) and Cdk2 (blue) phosphorylated at T160 (cyan) and bound with the ATP... analogue Adenylyl Imidodiphosphate (AMPPNP) (grey).
Publication Year: 2013
Multisite phosphorylation networks as signal processors for Cdk1.
(2013) Nat Struct Mol Biol 20
PubMed: 24186061 | PubMedCentral: PMC3855452 | DOI: 10.1038/nsmb.2706
The model was created by superimposing domains from crystal structures (PDB codes: 1BUH, 2CCI, 4LPA) solved in the presence of the relevant substrate peptide bound to the pocket 41 , 45 , 55 .
Physicochemical mechanisms of protein regulation by phosphorylation.
(2014) Front Genet 5
PubMed: 25147561 | PubMedCentral: PMC4124799 | DOI: 10.3389/fgene.2014.00270
(B) A model of the cyclin–Cdk–Cks1 complex with the relevant substrate peptide constructed based on 1BUH, 2CCI, and 4LPA PDB structures [as described in the previous paper ( Koivomagi ... t al., 2013 )].
Publication Year: 2014
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