Primary Citation PubMed: 16406071
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Amyloidogenic determinants are usually not buried.
(2009) BMC Struct Biol 9
PubMed: 19589171 | PubMedCentral: PMC2714319 | DOI: 10.1186/1472-6807-9-44
These 5 protein models, (see also Additional file 2 ), which were produced utilizing PyMOL [ 34 ] are: (H) Immunoglobulin κ-4 light chain (PDB ID: 1LVE ); (I) Superoxide dismutase ( 2C9V ); (J... Immunoglobulin G1 heavy chain ( 1HZH ); (K) Insulin ( 1ZNJ ); (L) Cystatin C ( 1R4C ).
Publication Year: 2009
Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases.
(2009) PLoS Comput Biol 5
PubMed: 19696882 | PubMedCentral: PMC2719061 | DOI: 10.1371/journal.pcbi.1000476
Dimeric structure of SOD1 (PDB code 2C9V).
B) The interface in the native dimeric structure of SOD1 is used for calculation (PDB ID:2C9V).
According to the crystal structure of the SOD1 dimer (PDB ID: 2C9V)  , the real interface between the two SOD1 subunits involves residues V5, V7, F50-T54, I113-R115, V148, and G150-Q153 ( Figure 4B ).
Metal-free ALS variants of dimeric human Cu,Zn-superoxide dismutase have enhanced populations of monomeric species.
(2010) PLoS One 5
PubMed: 20404910 | PubMedCentral: PMC2852398 | DOI: 10.1371/journal.pone.0010064
The figure was generated with PyMOL  using pdb code 2c9v  .
Publication Year: 2010
AH-DB: collecting protein structure pairs before and after binding.
(2012) Nucleic Acids Res 40
PubMed: 22084200 | PubMedCentral: PMC3245139 | DOI: 10.1093/nar/gkr940
This result perfectly matches the study that was performed by Galaleldeen et al. ( 25 ), in which the authors used another metal-bound structure (2C9V) and had to crystallize two metal-free structures... for their analysis.
Publication Year: 2012
Identification of human monoclonal antibodies specific for human SOD1 recognizing distinct epitopes and forms of SOD1.
(2013) PLoS One 8
PubMed: 23613814 | PubMedCentral: PMC3629177 | DOI: 10.1371/journal.pone.0061210
(A) The crystal structure of one monomer of a hSOD1 dimer (2C9V) is indicated in ribbon model from Rasmol.
Publication Year: 2013
An emerging role for misfolded wild-type SOD1 in sporadic ALS pathogenesis.
(2013) Front Cell Neurosci 7
PubMed: 24379756 | PubMedCentral: PMC3863749 | DOI: 10.3389/fncel.2013.00253
SOD1 is a homodimer with one copper (orange) and one zinc (blue) per subunit (PDB:2C9V).
Heat shock factor 1 over-expression protects against exposure of hydrophobic residues on mutant SOD1 and early mortality in a mouse model of amyotrophic lateral sclerosis.
(2013) Mol Neurodegener 8
PubMed: 24256636 | PubMedCentral: PMC3907013 | DOI: 10.1186/1750-1326-8-43
BisANS docking BisANS was docked to SOD1 (dimeric WT metallated: [2C9V] or monomeric apo H46R/H48Q:[3GQF]) using Autodock Vina [ 79 ].
BisANS docked to multiple sites around the metal binding region of H46R/H48Q SOD1 In order to investigate possible binding sites of bisANS in WT or mutant SOD1, crystal structures of dimeric WT holo human SOD1 [2C9V] and monomeric H46R/H48Q apo SOD1 [3GQF] were docked with bisANS (Figure 2 ), as WT holo SOD1 is known to exist as a dimer, while H46R/H48Q has been reported to be poorly metallated and can exist as a monomer [ 39 , 40 ].
A model of protein association based on their hydrophobic and electric interactions.
(2014) PLoS One 9
PubMed: 25329830 | PubMedCentral: PMC4201486 | DOI: 10.1371/journal.pone.0110352
Analyzing the crystal structure of SOD1 (PDBid: 2C9V), it was found that native monomers associate as a dimer by opposing both their electric dipole (163°) and hydrophobic moments (162°... ).
Red ( D ) and green ( H ): native dimer, PDBid: 2C9V.
Publication Year: 2014
PubMed ID is not available.
Published in 2015
The structure used for calculation was the high-resolution structure 2C9V.
Sites are marked in ball-and-stick on the protein structure (2C9V.
Publication Year: 2015
We used A3D to analyze the aggregation propensity of TTR (PDB: 1TTA) and SOD1 (PDB: 2C9V) quaternary native states and their monomeric constituents.
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