Citations in PubMed

Primary Citation PubMed: 16406071 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 10

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Amyloidogenic determinants are usually not buried.

(2009) BMC Struct Biol 9

PubMed: 19589171 | PubMedCentral: PMC2714319 | DOI: 10.1186/1472-6807-9-44

These 5 protein models, (see also Additional file 2 ), which were produced utilizing PyMOL [ 34 ] are: (H) Immunoglobulin κ-4 light chain (PDB ID: 1LVE ); (I) Superoxide dismutase ( 2C9V ); (J... Immunoglobulin G1 heavy chain ( 1HZH ); (K) Insulin ( 1ZNJ ); (L) Cystatin C ( 1R4C ).

Publication Year: 2009

Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases.

(2009) PLoS Comput Biol 5

PubMed: 19696882 | PubMedCentral: PMC2719061 | DOI: 10.1371/journal.pcbi.1000476

Dimeric structure of SOD1 (PDB code 2C9V).

B) The interface in the native dimeric structure of SOD1 is used for calculation (PDB ID:2C9V).

According to the crystal structure of the SOD1 dimer (PDB ID: 2C9V) [66] , the real interface between the two SOD1 subunits involves residues V5, V7, F50-T54, I113-R115, V148, and G150-Q153 ( Figure 4B ).

Publication Year: 2009

Metal-free ALS variants of dimeric human Cu,Zn-superoxide dismutase have enhanced populations of monomeric species.

(2010) PLoS One 5

PubMed: 20404910 | PubMedCentral: PMC2852398 | DOI: 10.1371/journal.pone.0010064

The figure was generated with PyMOL [52] using pdb code 2c9v [53] .

Publication Year: 2010

AH-DB: collecting protein structure pairs before and after binding.

(2012) Nucleic Acids Res 40

PubMed: 22084200 | PubMedCentral: PMC3245139 | DOI: 10.1093/nar/gkr940

This result perfectly matches the study that was performed by Galaleldeen et al. ( 25 ), in which the authors used another metal-bound structure (2C9V) and had to crystallize two metal-free structures... for their analysis.

Publication Year: 2012

Identification of human monoclonal antibodies specific for human SOD1 recognizing distinct epitopes and forms of SOD1.

(2013) PLoS One 8

PubMed: 23613814 | PubMedCentral: PMC3629177 | DOI: 10.1371/journal.pone.0061210

(A) The crystal structure of one monomer of a hSOD1 dimer (2C9V) is indicated in ribbon model from Rasmol.

Publication Year: 2013

An emerging role for misfolded wild-type SOD1 in sporadic ALS pathogenesis.

(2013) Front Cell Neurosci 7

PubMed: 24379756 | PubMedCentral: PMC3863749 | DOI: 10.3389/fncel.2013.00253

SOD1 is a homodimer with one copper (orange) and one zinc (blue) per subunit (PDB:2C9V).

Publication Year: 2013

Heat shock factor 1 over-expression protects against exposure of hydrophobic residues on mutant SOD1 and early mortality in a mouse model of amyotrophic lateral sclerosis.

(2013) Mol Neurodegener 8

PubMed: 24256636 | PubMedCentral: PMC3907013 | DOI: 10.1186/1750-1326-8-43

BisANS docking BisANS was docked to SOD1 (dimeric WT metallated: [2C9V] or monomeric apo H46R/H48Q:[3GQF]) using Autodock Vina [ 79 ].

BisANS docked to multiple sites around the metal binding region of H46R/H48Q SOD1 In order to investigate possible binding sites of bisANS in WT or mutant SOD1, crystal structures of dimeric WT holo human SOD1 [2C9V] and monomeric H46R/H48Q apo SOD1 [3GQF] were docked with bisANS (Figure  2 ), as WT holo SOD1 is known to exist as a dimer, while H46R/H48Q has been reported to be poorly metallated and can exist as a monomer [ 39 , 40 ].

Publication Year: 2013

A model of protein association based on their hydrophobic and electric interactions.

(2014) PLoS One 9

PubMed: 25329830 | PubMedCentral: PMC4201486 | DOI: 10.1371/journal.pone.0110352

Analyzing the crystal structure of SOD1 (PDBid: 2C9V), it was found that native monomers associate as a dimer by opposing both their electric dipole (163°) and hydrophobic moments (162°... ).

Red ( D ) and green ( H ): native dimer, PDBid: 2C9V.

Publication Year: 2014

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4370410

The structure used for calculation was the high-resolution structure 2C9V.

Sites are marked in ball-and-stick on the protein structure (2C9V.

Publication Year: 2015

PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4489226

We used A3D to analyze the aggregation propensity of TTR (PDB: 1TTA) and SOD1 (PDB: 2C9V) quaternary native states and their monomeric constituents.

Publication Year: 2015