Citations in PubMed

Primary Citation PubMed: 16429154 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL.

(2009) PLoS Comput Biol 5

PubMed: 19381265 | PubMedCentral: PMC2664929 | DOI: 10.1371/journal.pcbi.1000360

A. Single GroEL subunit (*) RMSD (Å) 1GR5_A (T) 2C7E_A (R) 2C7C_A (R′) 1GRU_A (R″) 1GR5_A ( T ) – 5.21 12.06 12.33 2C7E_A ( R ) 5.21 – 12.23 12.35 2C7C_... ( R′ ) 12.06 12.23 – 1.50 1GRU_A ( R″ ) 12.33 12.35 1.50 – B. Intact GroEL RMSD (Å) 1GR5 (T/T) 2C7E (R/T) 2C7C (R′/T) 1AON (R″/T) 1GRU (R″/R) 1GR5 ( T/T ) – 6.72 12.09 11.48 12.19 2C7E ( R/T ) 6.72 – 10.85 10.65 11.03 2C7C ( R′T ) 12.09 10.85 – 3.17 2.65 1AON ( R″/T ) 11.48 10.65 3.17 – 2.67 1GRU ( R″/R ) 12.19 11.03 2.65 2.67 – (*) based on α-carbons.

The PDB ids for the structures T/T, R/T, R″/R, R′/T and R″/T are 1GR5, 2C7E and 1GRU [68] , 2C7C [15] and 1AON [20] , respectively.

Publication Year: 2009


Generating triangulated macromolecular surfaces by Euclidean Distance Transform.

(2009) PLoS One 4

PubMed: 19956577 | PubMedCentral: PMC2779860 | DOI: 10.1371/journal.pone.0008140

The corresponding PDB file is 2c7c, which has 21 chains.

Left panel is the isosurface of electron microscopy volume data (EMDB ID: 1180); right panel is the molecular surface of PDB data (PDB ID: 2c7c).

Publication Year: 2009


Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

(2011) PLoS Comput Biol 7

PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004

Six structures were omitted due to large amount of missing coordinates (PDB-codes: 2CGT, 1GR5, 1IOK, 2C7C, 1GRL, 3CAU).

Publication Year: 2011


ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.

(2012) Cell 149

PubMed: 22445172 | PubMedCentral: PMC3326522 | DOI: 10.1016/j.cell.2012.02.047

For the comparison with the GroES-bound state, we used the EM-derived model (PDB ID 2C7C) because the ring interface conformation in the crystal lattice is different from the one observed in solution ... Ranson et al., 2006 ).

Publication Year: 2012


ATP-driven molecular chaperone machines.

(2013) Biopolymers 99

PubMed: 23877967 | PubMedCentral: PMC3814418 | DOI: 10.1002/bip.22361

Slice through the centre of GroEL–GroES–ATP and ADP complexes with the intersubunit β-sheet shown in green and red for the equatorial domains in the trans ring (ring opposite G... oES) (EM Databank and PDB ID: EMD-1180/2C7C and EMD-1181/2C7D).

Publication Year: 2013


Protein folding, protein homeostasis, and cancer.

(2011) Chin J Cancer 30

PubMed: 21272445 | PubMedCentral: PMC4013342 | DOI: null

(Image produced from PDB entry 2c7c; data originally from reference [59] .)

Publication Year: 2011