Primary Citation PubMed: 16429154
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Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL.
(2009) PLoS Comput Biol 5
PubMed: 19381265 | PubMedCentral: PMC2664929 | DOI: 10.1371/journal.pcbi.1000360
A. Single GroEL subunit (*) RMSD (Å) 1GR5_A (T) 2C7E_A (R) 2C7C_A (R′) 1GRU_A (R″) 1GR5_A ( T ) – 5.21 12.06 12.33 2C7E_A ( R ) 5.21 – 12.23 12.35 2C7C_... ( R′ ) 12.06 12.23 – 1.50 1GRU_A ( R″ ) 12.33 12.35 1.50 – B. Intact GroEL RMSD (Å) 1GR5 (T/T) 2C7E (R/T) 2C7C (R′/T) 1AON (R″/T) 1GRU (R″/R) 1GR5 ( T/T ) – 6.72 12.09 11.48 12.19 2C7E ( R/T ) 6.72 – 10.85 10.65 11.03 2C7C ( R′T ) 12.09 10.85 – 3.17 2.65 1AON ( R″/T ) 11.48 10.65 3.17 – 2.67 1GRU ( R″/R ) 12.19 11.03 2.65 2.67 – (*) based on α-carbons.
The PDB ids for the structures T/T, R/T, R″/R, R′/T and R″/T are 1GR5, 2C7E and 1GRU  , 2C7C  and 1AON  , respectively.
Publication Year: 2009
Generating triangulated macromolecular surfaces by Euclidean Distance Transform.
(2009) PLoS One 4
PubMed: 19956577 | PubMedCentral: PMC2779860 | DOI: 10.1371/journal.pone.0008140
The corresponding PDB file is 2c7c, which has 21 chains.
Left panel is the isosurface of electron microscopy volume data (EMDB ID: 1180); right panel is the molecular surface of PDB data (PDB ID: 2c7c).
Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.
(2011) PLoS Comput Biol 7
PubMed: 21423709 | PubMedCentral: PMC3053311 | DOI: 10.1371/journal.pcbi.1002004
Six structures were omitted due to large amount of missing coordinates (PDB-codes: 2CGT, 1GR5, 1IOK, 2C7C, 1GRL, 3CAU).
Publication Year: 2011
ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.
(2012) Cell 149
PubMed: 22445172 | PubMedCentral: PMC3326522 | DOI: 10.1016/j.cell.2012.02.047
For the comparison with the GroES-bound state, we used the EM-derived model (PDB ID 2C7C) because the ring interface conformation in the crystal lattice is different from the one observed in solution ... Ranson et al., 2006 ).
Publication Year: 2012
ATP-driven molecular chaperone machines.
(2013) Biopolymers 99
PubMed: 23877967 | PubMedCentral: PMC3814418 | DOI: 10.1002/bip.22361
Slice through the centre of GroEL–GroES–ATP and ADP complexes with the intersubunit β-sheet shown in green and red for the equatorial domains in the trans ring (ring opposite G... oES) (EM Databank and PDB ID: EMD-1180/2C7C and EMD-1181/2C7D).
Publication Year: 2013
Protein folding, protein homeostasis, and cancer.
(2011) Chin J Cancer 30
PubMed: 21272445 | PubMedCentral: PMC4013342 | DOI: null
(Image produced from PDB entry 2c7c; data originally from reference  .)
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