Citations in PubMed

Primary Citation PubMed: 16193063 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 10

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Loop B is a major structural component of the 5-HT3 receptor.

(2008) Biophys J 95

PubMed: 18931259 | PubMedCentral: PMC2599823 | DOI: 10.1529/biophysj.108.135624

( E ) Small antagonist bound, (modeled from AChBP with 2-methyllcaconitine, PDB ID 2byr) ( F ) Overlays of the modeled loop B backbones from A–E compiled with Swiss-PdbViewer “magic fi... ”, using residues Ser-177 to Asn-191 as a reference point.

Three-dimensional models of the extracellular region of the 5-HT 3 receptor were built using MODELER 6v2 ( 22 ) based on the crystal structure of AChBP in different states; unbound (Protein Data Bank (PDB) ID 2byn), agonist bound (carbomylcholine, PDB ID 1uv6 and epibatidine, PDB ID 2byq) and antagonist bound (2-methyllcaconitine, PDB ID 2byr and α -cobratoxin, PDB ID 1yi5).

Publication Year: 2008

A structural and mutagenic blueprint for molecular recognition of strychnine and d-tubocurarine by different cys-loop receptors.

(2011) PLoS Biol 9

PubMed: 21468359 | PubMedCentral: PMC3066128 | DOI: 10.1371/journal.pbio.1001034

Accession Numbers Protein Data Bank accession codes for previously published X-ray crystal structures are: Ac-AChBP in complex with lobeline (2bys), epibatidine (2byq), imidacloprid (3c79), thiaclopri... (3c84), HEPES (2br7), polyethyleneglycol (2byn), DMXBA (2wnj), 4OH-DMXBA (2wn9), cocaine (2pgz), anabaseine (2wnl), in silico compound 31 (2w8f), MLA (2byr), in silico compound 35 (2w8g), sulfates (3gua), α-conotoxin ImI (2c9t and 2byp), α-conotoxin PnIA variant (2br8), α-conotoxin TxIA (2uz6), apo state (2w8e), Y53C-MMTS (2xz5) with acetylcholine, Y53C-MTSET (2xz6).

Publication Year: 2011

Identification of a negative allosteric site on human ?4?2 and ?3?4 neuronal nicotinic acetylcholine receptors.

(2011) PLoS One 6

PubMed: 21949802 | PubMedCentral: PMC3174232 | DOI: 10.1371/journal.pone.0024949

Two roughly aligned AChBP templates (PDB ID: 1UWG and PDB ID: 2BYR) were used with symmetry restraints.

Four different crystallographic templates were used in the homology modeling process: three different molluskan species of AChBP (PDB IDs: 1UW6 [35] , 2BYR [36] , and 2BJ0 [19] ) as well as the mouse α1 ECD monomer (PDB ID: 2QC1 [21] ).

Publication Year: 2011

An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors.

(2012) J Gen Physiol 140

PubMed: 22732309 | PubMedCentral: PMC3382718 | DOI: 10.1085/jgp.201210801

: 2WN9 , 2WNL , 2BYN (apo-), 2PGZ , 2W8F , 2W8G , 2XYT , 2WNJ , 2BYQ , 2BR7 , 3C79 , 2BYR , 2XYS , 3GUA , 3C84 , 2WNC , 2XZ6 , 2XZ5 , and 2BYS .

Publication Year: 2012

Structural characterization of binding mode of smoking cessation drugs to nicotinic acetylcholine receptors through study of ligand complexes with acetylcholine-binding protein.

(2012) J Biol Chem 287

PubMed: 22553201 | PubMedCentral: PMC3390607 | DOI: 10.1074/jbc.M112.360347

Ribbon representation of LsAChBP in complex with nicotine ( blue ), cytisine ( orange ), varenicline ( green ), methyllycaconitine ( gray , PDB code 2BYR ) and DMXBA ( pink , PDB code 2WNJ ) superpose... with respect to their principal face.

Publication Year: 2012

Design, synthesis, and structure-activity relationships of highly potent 5-HT? receptor ligands.

(2012) J Med Chem 55

PubMed: 23006041 | PubMedCentral: PMC3504484 | DOI: 10.1021/jm300801u

10026168 PDB: 2BYR , 2PGZ , 2BYS , 2XYT .

Structural waters located in this binding pocket of the 2WNC crystal structure form a conserved protein–ligand H-bond interaction network in several other AChBP crystals containing small competitive antagonists (e.g., 2BYR , 2PGZ , 2BYS , 2XYT ( 44 )), and were included in the 5-HT 3 A receptor model.

(a) Overlay of the waters participating in the structural water network in several different AChBP crystal structures (red: 2WNC ; blue: 2BYR ; cyan: 2PGZ ; green: 2BYS ; yellow: 2XYT ).

Publication Year: 2012

High-Throughput parallel blind Virtual Screening using BINDSURF.

(2012) BMC Bioinformatics 13 Suppl 14

PubMed: 23095663 | PubMedCentral: PMC3504923 | DOI: 10.1186/1471-2105-13-S14-S13

Figure 7 Surface screening results for PDB: 2BYR .

In the case of acetylcholine-binding proteins (PDB: 2BYR ), which provide very useful information for the modeling of the extracellular domain of pentameric ligand-Gated ion channels, we also obtained good agreement with the experimental results, as shown in Figure 7 .

Surface screening results for PDB: 2BYR .

Publication Year: 2012

Assembly of a ?-? stack of ligands in the binding site of an acetylcholine-binding protein.

(2013) Nat Commun 4

PubMed: 23695669 | PubMedCentral: PMC3674282 | DOI: 10.1038/ncomms2900

However, MLA (PDB:2BYR) is in a different site closer to the five-fold axis than VUF9432, which uses a lower, more external cavity ( Fig. 2b ).

Publication Year: 2013

Structure-activity relationships of quinoxaline-based 5-HT3A and 5-HT3AB receptor-selective ligands.

(2013) ChemMedChem 8

PubMed: 23640722 | PubMedCentral: PMC4063337 | DOI: 10.1002/cmdc.201300032

Structural waters located in the binding pocket of the original crystal structure (PDB code: 2WNC) 19 form a conserved protein–ligand hydrogen bond interaction network in several other AChBP c... ystals (e.g., 2BYR, 2PGZ, 2BYS, 2XYT) and were included in the 5-HT 3 AB receptor model.

Publication Year: 2013

Photo-antagonism of the GABAA receptor.

(2014) Nat Commun 5

PubMed: 25072879 | PubMedCentral: PMC4124873 | DOI: 10.1038/ncomms5454

For antagonists of comparable size to gabazine and GZ-B1, such as methyllycaconitine, the positioning of loop C in AChBP is unchanged (PDB: 2BYR) 36 .

Publication Year: 2014