Primary Citation PubMed: 16193063
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Loop B is a major structural component of the 5-HT3 receptor.
(2008) Biophys J 95
PubMed: 18931259 | PubMedCentral: PMC2599823 | DOI: 10.1529/biophysj.108.135624
Three-dimensional models of the extracellular region of the 5-HT 3 receptor were built using MODELER 6v2 ( 22 ) based on the crystal structure of AChBP in different states; unbound (Protein Data Bank ... PDB) ID 2byn), agonist bound (carbomylcholine, PDB ID 1uv6 and epibatidine, PDB ID 2byq) and antagonist bound (2-methyllcaconitine, PDB ID 2byr and α -cobratoxin, PDB ID 1yi5).
( A ) Unbound structure (modeled from AChBP with no ligand, PDB ID 2byn).
Publication Year: 2008
A structural and mutagenic blueprint for molecular recognition of strychnine and d-tubocurarine by different cys-loop receptors.
(2011) PLoS Biol 9
PubMed: 21468359 | PubMedCentral: PMC3066128 | DOI: 10.1371/journal.pbio.1001034
Accession Numbers Protein Data Bank accession codes for previously published X-ray crystal structures are: Ac-AChBP in complex with lobeline (2bys), epibatidine (2byq), imidacloprid (3c79), thiaclopri... (3c84), HEPES (2br7), polyethyleneglycol (2byn), DMXBA (2wnj), 4OH-DMXBA (2wn9), cocaine (2pgz), anabaseine (2wnl), in silico compound 31 (2w8f), MLA (2byr), in silico compound 35 (2w8g), sulfates (3gua), α-conotoxin ImI (2c9t and 2byp), α-conotoxin PnIA variant (2br8), α-conotoxin TxIA (2uz6), apo state (2w8e), Y53C-MMTS (2xz5) with acetylcholine, Y53C-MTSET (2xz6).
Publication Year: 2011
Identification of a negative allosteric site on human ?4?2 and ?3?4 neuronal nicotinic acetylcholine receptors.
(2011) PLoS One 6
PubMed: 21949802 | PubMedCentral: PMC3174232 | DOI: 10.1371/journal.pone.0024949
Crystallographic structures for AChBP bound to epibatidine, nicotine, and carbamylcholine (PDB IDs: 2BYN, 1UW6, and 1UV6 respectively) were superimposed on nAChR ECD models to determine RMSDs of the d... ckings.
An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors.
(2012) J Gen Physiol 140
PubMed: 22732309 | PubMedCentral: PMC3382718 | DOI: 10.1085/jgp.201210801
: 2WN9 , 2WNL , 2BYN (apo-), 2PGZ , 2W8F , 2W8G , 2XYT , 2WNJ , 2BYQ , 2BR7 , 3C79 , 2BYR , 2XYS , 3GUA , 3C84 , 2WNC , 2XZ6 , 2XZ5 , and 2BYS .
Publication Year: 2012
Allosteric activation mechanism of the cys-loop receptors.
(2009) Acta Pharmacol Sin 30
PubMed: 19444220 | PubMedCentral: PMC4002373 | DOI: 10.1038/aps.2009.51
(A) AChBPs crystallized in apo state (red, from 2BYN), Epibatidine (agonist)-bound state (green, from 2BYQ) and ImI (antagonist)-bound state (blue, from 2BYP).
Publication Year: 2009
Photo-antagonism of the GABAA receptor.
(2014) Nat Commun 5
PubMed: 25072879 | PubMedCentral: PMC4124873 | DOI: 10.1038/ncomms5454
Based on the alignment, two 3D homology models of the α1β2γ2 GABA A receptor were built with MODELLER 59 using the crystal structures of AChBP (PDB ID: 2BYN) at 2.02 ... 000c5; resolution and of GluCl (PDB ID: 3RHW) at 3.26 Å resolution.
Ligand docking using a GABA A receptor model based on AChBP To understand how GZ-B1 binds within the GABA site, we first performed GOLD 35 docking simulations of GABA, gabazine and GZ-B1 with the α1β2γ2 GABA A receptor modelled on the 2 Å resolution crystal structure of the unliganded acetylcholine binding protein (apo-AChBP, PDB ID: 2BYN).
Publication Year: 2014
Crystal structure of a human GABAA receptor.
(2014) Nature 512
PubMed: 24909990 | PubMedCentral: PMC4167603 | DOI: 10.1038/nature13293
a, Structural alignment of GABA A R-β3 cryst and GluClα (PDB ID: 3RIF, red backbone, with its agonist glutamate in orange); b, Structural alignment of GABA A R-β3 cryst and ACh... P (PDB ID: 1UV6, red backbone) with agonist carbamylcholine bound (orange backbone); c, Structural alignment of GABA A R-β3 cryst and AChBP (PDB ID: 2BYN, red backbone) in apo form; d, Structural alignment of GABA A R-β3 cryst and AChBP (PDB ID: 2C9T, red backbone) in an inhibitor toxin bound form (the toxin was excluded for clarity).
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