Citations in PubMed

Primary Citation PubMed: 16193063 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Loop B is a major structural component of the 5-HT3 receptor.

(2008) Biophys J 95

PubMed: 18931259 | PubMedCentral: PMC2599823 | DOI: 10.1529/biophysj.108.135624

Three-dimensional models of the extracellular region of the 5-HT 3 receptor were built using MODELER 6v2 ( 22 ) based on the crystal structure of AChBP in different states; unbound (Protein Data Bank ... PDB) ID 2byn), agonist bound (carbomylcholine, PDB ID 1uv6 and epibatidine, PDB ID 2byq) and antagonist bound (2-methyllcaconitine, PDB ID 2byr and α -cobratoxin, PDB ID 1yi5).

( A ) Unbound structure (modeled from AChBP with no ligand, PDB ID 2byn).

Publication Year: 2008

A structural and mutagenic blueprint for molecular recognition of strychnine and d-tubocurarine by different cys-loop receptors.

(2011) PLoS Biol 9

PubMed: 21468359 | PubMedCentral: PMC3066128 | DOI: 10.1371/journal.pbio.1001034

Accession Numbers Protein Data Bank accession codes for previously published X-ray crystal structures are: Ac-AChBP in complex with lobeline (2bys), epibatidine (2byq), imidacloprid (3c79), thiaclopri... (3c84), HEPES (2br7), polyethyleneglycol (2byn), DMXBA (2wnj), 4OH-DMXBA (2wn9), cocaine (2pgz), anabaseine (2wnl), in silico compound 31 (2w8f), MLA (2byr), in silico compound 35 (2w8g), sulfates (3gua), α-conotoxin ImI (2c9t and 2byp), α-conotoxin PnIA variant (2br8), α-conotoxin TxIA (2uz6), apo state (2w8e), Y53C-MMTS (2xz5) with acetylcholine, Y53C-MTSET (2xz6).

Publication Year: 2011

Identification of a negative allosteric site on human ?4?2 and ?3?4 neuronal nicotinic acetylcholine receptors.

(2011) PLoS One 6

PubMed: 21949802 | PubMedCentral: PMC3174232 | DOI: 10.1371/journal.pone.0024949

Crystallographic structures for AChBP bound to epibatidine, nicotine, and carbamylcholine (PDB IDs: 2BYN, 1UW6, and 1UV6 respectively) were superimposed on nAChR ECD models to determine RMSDs of the d... ckings.

Publication Year: 2011

An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors.

(2012) J Gen Physiol 140

PubMed: 22732309 | PubMedCentral: PMC3382718 | DOI: 10.1085/jgp.201210801

: 2WN9 , 2WNL , 2BYN (apo-), 2PGZ , 2W8F , 2W8G , 2XYT , 2WNJ , 2BYQ , 2BR7 , 3C79 , 2BYR , 2XYS , 3GUA , 3C84 , 2WNC , 2XZ6 , 2XZ5 , and 2BYS .

Publication Year: 2012

Allosteric activation mechanism of the cys-loop receptors.

(2009) Acta Pharmacol Sin 30

PubMed: 19444220 | PubMedCentral: PMC4002373 | DOI: 10.1038/aps.2009.51

(A) AChBPs crystallized in apo state (red, from 2BYN), Epibatidine (agonist)-bound state (green, from 2BYQ) and ImI (antagonist)-bound state (blue, from 2BYP).

Publication Year: 2009

Photo-antagonism of the GABAA receptor.

(2014) Nat Commun 5

PubMed: 25072879 | PubMedCentral: PMC4124873 | DOI: 10.1038/ncomms5454

Based on the alignment, two 3D homology models of the α1β2γ2 GABA A receptor were built with MODELLER 59 using the crystal structures of AChBP (PDB ID: 2BYN) at 2.02 &#... 000c5; resolution and of GluCl (PDB ID: 3RHW) at 3.26 Å resolution.

Ligand docking using a GABA A receptor model based on AChBP To understand how GZ-B1 binds within the GABA site, we first performed GOLD 35 docking simulations of GABA, gabazine and GZ-B1 with the α1β2γ2 GABA A receptor modelled on the 2 Å resolution crystal structure of the unliganded acetylcholine binding protein (apo-AChBP, PDB ID: 2BYN).

Publication Year: 2014

Crystal structure of a human GABAA receptor.

(2014) Nature 512

PubMed: 24909990 | PubMedCentral: PMC4167603 | DOI: 10.1038/nature13293

a, Structural alignment of GABA A R-β3 cryst and GluClα (PDB ID: 3RIF, red backbone, with its agonist glutamate in orange); b, Structural alignment of GABA A R-β3 cryst and ACh... P (PDB ID: 1UV6, red backbone) with agonist carbamylcholine bound (orange backbone); c, Structural alignment of GABA A R-β3 cryst and AChBP (PDB ID: 2BYN, red backbone) in apo form; d, Structural alignment of GABA A R-β3 cryst and AChBP (PDB ID: 2C9T, red backbone) in an inhibitor toxin bound form (the toxin was excluded for clarity).

Publication Year: 2014