Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

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PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Co-crystalization and in vitro biological characterization of 5-aryl-4-(5-substituted-2-4-dihydroxyphenyl)-1,2,3-thiadiazole Hsp90 inhibitors.

(2012) PLoS One 7

PubMed: 22984537 | PubMedCentral: PMC3439374 | DOI: 10.1371/journal.pone.0044642

For a variety of pyrazole and isoxazole inhibitors the conformation of the loop is either in an open (pdb 2BYI and 2BYH) or compact conformation (pdb 2CCU, 2VCJ, 2CCT, 2CCS, 2BSM and 2BT0).

Publication Year: 2012


Hsp90 inhibitors, part 2: combining ligand-based and structure-based approaches for virtual screening application.

(2014) J Chem Inf Model 54

PubMed: 24555544 | PubMedCentral: PMC3985681 | DOI: 10.1021/ci400760a

Table 1 RMSD and AA Values Calculated between the Random (RC) and Experimental Conformations (EC) in the Realignment and Cross-Alignment Processes (RCRA and RCCA, Respectively)     RCR... ECCA RCCA entry a PDB code RC vs EC EC vs all RC vs all 1 1UY8 0.46 0.37 0.52 2 1UYC 0.47 0.45 0.49 3 1UYD 0.7 0.36 0.43 4 1UYE 0.69 0.55 0.6 5 1UYG 0.41 0.74 0.65 6 1UYH 0.46 0.38 0.49 7 1UYK 0.62 0.26 0.56 13 2BT0 0.58 0.33 0.48 14 2CCS 0.46 0.64 0.74 16 2CCU 0.8 3.5 3.8 17 3B25 0.48 0.39 0.21 18 3B26 0.5 0.6 0.35 20 3B28 0.71 0.55 0.45 21 3OWB 0.65 0.74 0.7 22 3OWD 0.98 0.3 0.81           AA b   100 93.33 93.33 a Entry numbers are referred to those reported in Table 1 of reference ( 5 ) b Alignment accuracy, which refers to the fraction of correct and partially correct aligned structures (RMSD values of <2 Å and <3 Å, respectively), and it is explained by eq 1 .

Publication Year: 2014


Identification of two novel HSP90 proteins in Babesia orientalis: molecular characterization, and computational analyses of their structure, function, antigenicity and inhibitor interaction.

(2014) Parasit Vectors 7

PubMed: 24970594 | PubMedCentral: PMC4089566 | DOI: 10.1186/1756-3305-7-293

Table 2 Interaction of Babesia orientalis HSP90-A and B isoforms with inhibitors using docking analysis Name Protein showing interaction Template ID PDB code Geldanamycin BoHSP90-A, BoHSP90-B Gmy1 2ex... Radamide BoHSP90-A, BoHSP90-B Rda1001 2gfd Redicicol BoHSP90-A, BoHSP90-B Rdc301 1u0z Dihydroxyphenylpyrazoles BoHSP90-A, BoHSP90-B 4BC401 1yc1 PU8(8-(2-chloro-3,4,5-trimethoxy-benzyl)-2-fluoro-9-pent-4-ylnyl-9 h-purin-6-ylamine) BoHSP90-B PU11224 1uyf PU11 (8-(2,5-dimethoxy-benzyl)-2-fluoro-9- pent-9 h-purin-6-ylamine) BoHSP90-A Puz1224 1uyi 1-(2-phenol)-2-naphthol BoHSP90-A, BoHSP90-B AB41226 2bz5 3,4-diaryl pyrazole resorcinol (CCT018159) BoHSP90-A, BoHSP90-B Ct51224 2bt0 4-amino derivative of 3,4-diaryl pyrazole (4-chloro-6-(4-piperazin-1-yl-1 h-pyrazol-3-yl)-benzene-1,2-diol) BoHSP90-B 4BH1224 2ccs The template IDs are the identification numbers of inhibitors in RCSB Protein Data Bank.

Publication Year: 2014