Primary Citation PubMed: 15955819
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Antiviral therapy for hepatitis C virus: beyond the standard of care.
(2010) Viruses 2
PubMed: 21994657 | PubMedCentral: PMC3185663 | DOI: 10.3390/v2040826
The superimposed structures are 1GX6 (active site with UTP), 2BRK (with benzimidazole in thumb domain site 1), 1OS5 (with dihydropyranone in thumb domain 2 site), 1YVF (with benzothiadiazine in palm d... main site 1), 3FQL (with benzofuran in the palm domain site 2).
Publication Year: 2010
Structure based virtual screening of inhibitors for binding at the allosteric site of HCV RNA dependent RNA polymerase.
(2012) Bioinformation 8
PubMed: 23055616 | PubMedCentral: PMC3449378 | DOI: 10.6026/97320630008716
Methodology The 3D structure of HCV NS5B bounded with an allosteric inhibitor were retrieved from Protein databank (PDB), accession code 2BRK was found to bound to an allosteric inhibitor named compou... d 1.
Publication Year: 2012
Multiple virtual screening approaches for finding new hepatitis C virus RNA-dependent RNA polymerase inhibitors: structure-based screens and molecular dynamics for the pursue of new poly pharmacological inhibitors.
(2012) BMC Bioinformatics 13 Suppl 17
PubMed: 23282180 | PubMedCentral: PMC3521232 | DOI: 10.1186/1471-2105-13-S17-S5
However, we list the PDB codes and method of comparison below: Thumb I: All available thumb I inhibitors (e.g. benzimedazoles [ 35 ]) crystal structures in PDB were obtained (PDB ID: 2BRK , 2BRL , 2DX... , 2WCX , 2XWY , 3MWW ) Palm I: Three main chemical classes were discerned for the Palm I site, nominally: beznothiazoles (PDB ID: 3D5M , 3H5S , 3H5U ), benzothiadiazines (PDB ID: 3CWJ , 2FVC , 2GIQ , 3BR9 , 3BSA , 3BSC , 3CDE , 3CO9 , 3CVK , 3E51 , 3G86 , 3GYN , 3H2L , 3H59 , 3H98 , 3HHK ) and benzodiazepines (PDB ID: 3CSO , 3GNV , 3GNW , 3GOL ) Palm II Site: The PDB files 3FQK and 3FQL complexes with the HCV-796 inhibitor in both coordinates.
Selection of conserved epitopes from hepatitis C virus for pan-populational stimulation of T-cell responses.
(2013) Clin Dev Immunol 2013
PubMed: 24348677 | PubMedCentral: PMC3856138 | DOI: 10.1155/2013/601943
The HCV epitope TIMAKNEVF maps onto HCV polymerase (PDB: 2BRK) (c).
Publication Year: 2013
PubMed ID is not available.
Published in 2015
The crystal structures of NS5B are present in the Protein Data Bank with 2WCX, 33 2BRL, 2BRK, 34 2XWY, 35 and 2DXS 36 codes.
Publication Year: 2015
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