PubMed ID is not available.
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Conformational changes in protein loops and helices induced by post-translational phosphorylation.
(2006) PLoS Comput Biol 2
PubMed: 16628247 | PubMedCentral: PMC1440919 | DOI: 10.1371/journal.pcbi.0020032
Accession Numbers The Protein Data Bank ( http://www.rcsb.org/pdb ) accession numbers for the proteins discussed in this paper are as follows: β PGM, (PDB ID: 1LVH); CDK2, phosphorylated (PDB ... D: 1JST); CDK2, unphosphorylated (PDB ID: 1FIN); CDK2/KAP complex (PDB ID: 1FQ1); cyclin A (PDB ID: 1B39); ERK2, phosphorylated (PDB ID: 2ERK); ERK2, unphosphorylated (PDB ID: 1ERK); FixJ, phosphorylated (PDB ID: 1D5W); FixJ, unphosphorylated (PDB ID: 1DCK); GLM, (PDB ID: 1MKI); Hpr, phosphorylated (PDB ID: 1FU0); Hpr, unphosphorylated (PDB ID: 1PTF); LCK, (PDB ID: 3LCK); Pim1, (PDB ID: 2BIK); PMM, (PDB ID: 1K35); Psp, phosphorylated (PDB ID: 1J97); Psp, unphosphorylated (PDB ID: 1L7O); P38 γ, (PDB ID: 1CM8); SpoIIAA, phosphorylated (PDB ID: 1H4X); and SpoIIAA, unphosphorylated (PDB ID: 1H4Z); Spo0A, (PDB ID: 1QMP).
Publication Year: 2006
The scientific impact of the Structural Genomics Consortium: a protein family and ligand-centered approach to medically-relevant human proteins.
(2007) J Struct Funct Genomics 8
PubMed: 17932789 | PubMedCentral: PMC2140095 | DOI: 10.1007/s10969-007-9027-2
Cancer e Other-NAK STK10 2J7T 2.0 SU11274 Not known STE DAPK3 2J90 2.0 Pyridone 6 Cancer, Inflammation CAMK CAMK1G 2JAM 1.7 SU11652 Not known CAMK CAMK1D 2JC6 2.5 GSK inhibitor XIII Genetic CAMK a PAK... also deposited as an apo-structure in two different spacegroups: 2BVA, 2J01 b Structures with different inhibitors and substrate: PIM1: 2BIK, 2BZH,2BZI, 2BZJ, 2BZK, 2C3I, 2BIL, 2J2I; SLK: 2JA0 c CLK3 also deposited as phosphorylated protein: pdb-code: 2EXE.
Publication Year: 2007
Binding of protein kinase inhibitors to synapsin I inferred from pair-wise binding site similarity measurements.
(2010) PLoS One 5
PubMed: 20808948 | PubMedCentral: PMC2922380 | DOI: 10.1371/journal.pone.0012214
PDB a d2 b Name HET c 2oxd 0.1008 Casein kinase II subunit alpha K32 2oxx 0.1038 Casein kinase II subunit alpha K22 1yi3 0.1056 Proto-oncogene serine/threonine-protein kinase Pim-1 LY2 1tqm 0.1083 RIO... type serine/threonine-protein kinase Rio2 ANP 3cy3 0.1176 Proto-oncogene serine/threonine-protein kinase Pim-1 JN5 3bgz 0.1199 Proto-oncogene serine/threonine-protein kinase Pim-1 VX3 3cy2 0.1233 Proto-oncogene serine/threonine-protein kinase Pim-1 MB9 2bik 0.1327 Proto-oncogene serine/threonine-protein kinase Pim-1 BI1 2c1a 0.1339 Protein kinase A I5S 1xr1 0.1350 Proto-oncogene serine/threonine-protein kinase Pim-1 ANP 1bl6 0.1368 Mitogen-activated protein kinase 14 SB6 1q8u 0.1385 cAMP-dependent protein kinase catalytic subunit alpha H52 3bi6 0.1388 Wee1-like protein kinase 396 3biz 0.1395 Wee1-like protein kinase 61E 2i0e 0.1400 Protein kinase C beta type PDS 1cm8 0.1405 Mitogen-activated protein kinase 12 ANP 2uzv 0.1423 cAMP-dependent protein kinase catalytic subunit alpha SS5 1yi4 0.1456 Proto-oncogene serine/threonine-protein kinase Pim-1 ADN 2hen 0.1467 Ephrin type-B receptor 2 ADP 2rkp 0.1474 Casein kinase II subunit alpha RFZ 2ojg 0.1481 Mitogen-activated protein kinase 1 19A 2z7s 0.1481 Ribosomal protein S6 kinase alpha-1 P01 2csn 0.1482 Casein kinase I homolog 1 CKI 1yhs 0.1483 Proto-oncogene serine/threonine-protein kinase Pim-1 STU 1mu 0.1508 Serine/threonine-protein kinase 6 ADN a PDB entry  .
Publication Year: 2010
OGlcNAcylation and phosphorylation have similar structural effects in ?-helices: post-translational modifications as inducible start and stop signals in ?-helices, with greater structural effects on threonine modification.
(2014) Biochemistry 53
PubMed: 24641765 | PubMedCentral: PMC4004263 | DOI: 10.1021/bi500117c
Analysis of phosphoserine and phosphothreonine residues in α-helices in high-resolution structures in the PDB (structures at ≤2.4 Å, 90% sequence identity cutoff) indicated a s... rong preference for phosphoserine and phosphothreonine to be at or near the helical N-terminus when they were present in α-helices (pSer: 1h4x, 2fwn, 3mk1, 3ql6, 2w5w, 2bik, 3f3z, 1mki, and 3qic; pThr: 3ot9, 4iza, 2ga3, 2jfl, 2w8d, 2wtv, and 3u02; PDB entry 1r0z was the only example among these structures in which an α-helical phosphorylated residue was outside the first turn of the α-helix).
Publication Year: 2014
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.