Citations in PubMed

Primary Citation PubMed: 16339447 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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The role of hydrophobic interactions in positioning of peripheral proteins in membranes.

(2007) BMC Struct Biol 7

PubMed: 17603894 | PubMedCentral: PMC1934363 | DOI: 10.1186/1472-6807-7-44

Table 3 Predicted penetration depths ( D ) and binding energies (Δ G calc ) of peripheral proteins, whose orientations with respect to the membrane have been previously suggested based on thei... 3D structures Protein PDB id Δ G calc (kcal/mol) D (Å) References Lipid clamps GRK2 kinase -βγ complex 2bcj -5.5 5.0 [131] Seminal plasma protein 1h8p -12.3 9.2 [132] Myotubularin-related protein 1zvr -2.3 2.9 [133] Other proteins Fatty acid amine hydrolase 1mt5 -30.8 10.0 [134] Signal peptidase 1kn9 -4.5 4.5 [135] Lanosterol synthase 1w6k -19.9 6.5 [136] Monoamine oxidase 1o5w -19.9 6.5 [137] Prostaglandin E synthase 1z9h -13.1 4.4 [49] Carnitine O-palmitoyltransferase 2 2h4t -8.3 3.6 [138] Major envelope glycoprotein E 1ok8 -9.9 4.9 [139] Ferrochelatase 1hrk -9.2 7.2 [140] Sphingomyelinase C 1zwx -6.2 6.0 [141] α-Toxin (bacterial phospholipase C) 1olp -4.8 3.3 [142] β-glycosidase 1vff -6.5 3.3 [143] Hydroxysteroid dehydrogenase 1y5m -14.9 3.0 [144] Carotenoid oxygenase 2biw -12.7 5.1 [145] α-Tocopherol transfer protein 1oiz -20.7 8.4 [146] Phosphatidylinositol transfer protein 1aua -14.0 7.8 [147] Ganglioside GM2 activator 1pub -7.8 5.2 [148] Oxysterol-binding protein 1zi7 -5.9 3.0 [149] Viscotoxin A3 1okh -4.0 5.8 [150] a Other examples include phospholipases A 2 and C, microbial and mammalian lipases, annexins, mammalian cytochromes P450, and fatty acid binding proteins [5, 11, 48].

Publication Year: 2007


Evolution of a signaling nexus constrained by protein interfaces and conformational States.

(2010) PLoS Comput Biol 6

PubMed: 20976244 | PubMedCentral: PMC2954821 | DOI: 10.1371/journal.pcbi.1000962

( A ) The RH domain of GRK2, shown as a sand colored cartoon display, in complex with activated Gα i/q • GDP • Mg 2+ • AlF 4 − (PDB ID 2BCJ).

Structures used as templates – after the removal of the switch regions – were (PDB ID) 2BCJ (Gα q ), 1AZS (Gα s ), and 1ZCA (Gα 12 ).

Publication Year: 2010


Technical phosphoproteomic and bioinformatic tools useful in cancer research.

(2011) J Clin Bioinforma 1

PubMed: 21967744 | PubMedCentral: PMC3195713 | DOI: 10.1186/2043-9113-1-26

Analysis of the structural interactions of GRK2 [Swiss-Prot: P21146 ], Gαq [Swiss-Prot: P21279 ] and Gβγ proteins [Swiss-Prot: P62871 and Swiss-Prot: P63212 ] according to the ... rystallized structure of the macromolecular complex [PDB: 2BCJ ] .

Publication Year: 2011