Primary Citation PubMed: 16339447
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The role of hydrophobic interactions in positioning of peripheral proteins in membranes.
(2007) BMC Struct Biol 7
PubMed: 17603894 | PubMedCentral: PMC1934363 | DOI: 10.1186/1472-6807-7-44
Table 3 Predicted penetration depths ( D ) and binding energies (Δ G calc ) of peripheral proteins, whose orientations with respect to the membrane have been previously suggested based on thei... 3D structures Protein PDB id Δ G calc (kcal/mol) D (Å) References Lipid clamps GRK2 kinase -βγ complex 2bcj -5.5 5.0  Seminal plasma protein 1h8p -12.3 9.2  Myotubularin-related protein 1zvr -2.3 2.9  Other proteins Fatty acid amine hydrolase 1mt5 -30.8 10.0  Signal peptidase 1kn9 -4.5 4.5  Lanosterol synthase 1w6k -19.9 6.5  Monoamine oxidase 1o5w -19.9 6.5  Prostaglandin E synthase 1z9h -13.1 4.4  Carnitine O-palmitoyltransferase 2 2h4t -8.3 3.6  Major envelope glycoprotein E 1ok8 -9.9 4.9  Ferrochelatase 1hrk -9.2 7.2  Sphingomyelinase C 1zwx -6.2 6.0  α-Toxin (bacterial phospholipase C) 1olp -4.8 3.3  β-glycosidase 1vff -6.5 3.3  Hydroxysteroid dehydrogenase 1y5m -14.9 3.0  Carotenoid oxygenase 2biw -12.7 5.1  α-Tocopherol transfer protein 1oiz -20.7 8.4  Phosphatidylinositol transfer protein 1aua -14.0 7.8  Ganglioside GM2 activator 1pub -7.8 5.2  Oxysterol-binding protein 1zi7 -5.9 3.0  Viscotoxin A3 1okh -4.0 5.8  a Other examples include phospholipases A 2 and C, microbial and mammalian lipases, annexins, mammalian cytochromes P450, and fatty acid binding proteins [5, 11, 48].
Publication Year: 2007
Evolution of a signaling nexus constrained by protein interfaces and conformational States.
(2010) PLoS Comput Biol 6
PubMed: 20976244 | PubMedCentral: PMC2954821 | DOI: 10.1371/journal.pcbi.1000962
( A ) The RH domain of GRK2, shown as a sand colored cartoon display, in complex with activated Gα i/q • GDP • Mg 2+ • AlF 4 − (PDB ID 2BCJ).
Structures used as templates – after the removal of the switch regions – were (PDB ID) 2BCJ (Gα q ), 1AZS (Gα s ), and 1ZCA (Gα 12 ).
Publication Year: 2010
Technical phosphoproteomic and bioinformatic tools useful in cancer research.
(2011) J Clin Bioinforma 1
PubMed: 21967744 | PubMedCentral: PMC3195713 | DOI: 10.1186/2043-9113-1-26
Analysis of the structural interactions of GRK2 [Swiss-Prot: P21146 ], Gαq [Swiss-Prot: P21279 ] and Gβγ proteins [Swiss-Prot: P62871 and Swiss-Prot: P63212 ] according to the ... rystallized structure of the macromolecular complex [PDB: 2BCJ ] .
Publication Year: 2011
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