Primary Citation PubMed: 17495533
Citations in PubMed
This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.
Data mentions are occurrences of PDB IDs in the full text articles from the
PubMedCentral Open Access Subset
of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed.
Article titles can be filtered by keywords and sorted by year.
Molecular evolution of cyclin proteins in animals and fungi.
(2011) BMC Evol Biol 11
PubMed: 21798004 | PubMedCentral: PMC3162929 | DOI: 10.1186/1471-2148-11-224
Representative proteins with known 3D structures for the A, B1/B2, E and D cyclin families we taken from the PDB database [ 70 ]: 1H1R:B (KEGG ID 890) for cyclin A family; 2W9Z (KEGG ID 595) for cycli... D family; 2B9R:A (KEGG ID 891) for cyclins of B1, B2 families; 1W98:B (KEGG ID 898) for cyclins of E family.
3D structures of the representative proteins of B3 and fungal B cyclin families were reconstructed by Phyre server [ 71 ] using 2B9R:A as template structure: 3D model of Homo sapiens cyclin B3 (KEGG ID 898); 3D model of the Saccharomyces cerevisiae cyclin B (KEGG ID YGR108W).
Publication Year: 2011
PubMed ID is not available.
Published in 2014
(B) Cartoon representation of human cyclin B1 structure (Petri et al., 2007 ; PDB accession code 2B9R).
Human cyclin B1 secondary structure elements (Petri et al., 2007 ; PDB accession code 2B9R) are represented above the corresponding amino acid sequence (red cylinders, α-helices; yellow cylinders, 3 10 helices).
Biological processes Protein CUG-residue Template structure (PDB accession code) # Amino acid sequence identity (%) QMEAN score * Protein translation LeuRS 919 T. termophilus isoleucyl-tRNA synthetatse (1JZQ) 34 0.29 Ras signaling Ras1 66 Human Ras (3K8Y) 67 0.76 Csc25 (GEF) 939; 1059 Human Sos1-Ras complex (1BKD) 32 0.60 Ira2 (GAP) 1312; 1383; 1397 Human Ras-GAP334 complex (1WQ1) 30 0.53 MAPK pathway Cek1 199 S. cerevisiae Fus3 (2B9F) 64 0.70 Cell cycle Clb2 301; 383 Human cyclin B1 (2B9R) 39 0.66 Cdc28 – Human Cdk2-Cyclin B1 complex (2JGZ) 67 0.77 # The selected experimental three-dimensional structures were used as templates in SWISS-MODEL ( http://swissmodel.expasy.org/ ) (Arnold et al., 2006 ) for calculating homology models of C. albicans proteins, from which secondary structure elements were inferred and used in sequence alignments shown in Figures 3A , 5A , 6A,D .
Publication Year: 2014
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.