Primary Citation PubMed: 17495533
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Molecular evolution of cyclin proteins in animals and fungi.
(2011) BMC Evol Biol 11
PubMed: 21798004 | PubMedCentral: PMC3162929 | DOI: 10.1186/1471-2148-11-224
Representative proteins with known 3D structures for the A, B1/B2, E and D cyclin families we taken from the PDB database [ 70 ]: 1H1R:B (KEGG ID 890) for cyclin A family; 2W9Z (KEGG ID 595) for cycli... D family; 2B9R:A (KEGG ID 891) for cyclins of B1, B2 families; 1W98:B (KEGG ID 898) for cyclins of E family.
3D structures of the representative proteins of B3 and fungal B cyclin families were reconstructed by Phyre server [ 71 ] using 2B9R:A as template structure: 3D model of Homo sapiens cyclin B3 (KEGG ID 898); 3D model of the Saccharomyces cerevisiae cyclin B (KEGG ID YGR108W).
Publication Year: 2011
PubMed ID is not available.
Published in 2014
(B) Cartoon representation of human cyclin B1 structure (Petri et al., 2007 ; PDB accession code 2B9R).
Human cyclin B1 secondary structure elements (Petri et al., 2007 ; PDB accession code 2B9R) are represented above the corresponding amino acid sequence (red cylinders, α-helices; yellow cylinders, 3 10 helices).
Biological processes Protein CUG-residue Template structure (PDB accession code) # Amino acid sequence identity (%) QMEAN score * Protein translation LeuRS 919 T. termophilus isoleucyl-tRNA synthetatse (1JZQ) 34 0.29 Ras signaling Ras1 66 Human Ras (3K8Y) 67 0.76 Csc25 (GEF) 939; 1059 Human Sos1-Ras complex (1BKD) 32 0.60 Ira2 (GAP) 1312; 1383; 1397 Human Ras-GAP334 complex (1WQ1) 30 0.53 MAPK pathway Cek1 199 S. cerevisiae Fus3 (2B9F) 64 0.70 Cell cycle Clb2 301; 383 Human cyclin B1 (2B9R) 39 0.66 Cdc28 – Human Cdk2-Cyclin B1 complex (2JGZ) 67 0.77 # The selected experimental three-dimensional structures were used as templates in SWISS-MODEL ( http://swissmodel.expasy.org/ ) (Arnold et al., 2006 ) for calculating homology models of C. albicans proteins, from which secondary structure elements were inferred and used in sequence alignments shown in Figures 3A , 5A , 6A,D .
Publication Year: 2014
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