Primary Citation PubMed: 16314439
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Structural basis for CD1d presentation of a sulfatide derived from myelin and its implications for autoimmunity.
(2005) J Exp Med 202
PubMed: 16314439 | PubMedCentral: PMC2213337 | DOI: 10.1084/jem.20051625
Coordinates and structure factors for the CD1d–sulfatide complex have been deposited in the Protein Data Bank under accession code 2AKR.
Publication Year: 2005
Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.
(2014) BMC Bioinformatics 15
PubMed: 25260513 | PubMedCentral: PMC4261541 | DOI: 10.1186/1471-2105-15-319
Table 1 The TCR-CD1d-Ag and TCR-MR1-Ag test cases PDB code Complex TCR Ligand TCR name TCR type Ligand name Binding RMSD 1 , Å Difficulty 2 3HUJ [ 15 ] 2EYS [ 16 ] 1ZT4 [ 17 ] NKT15 Type I NKT... CD1d-α-GalCer 1.04 Rigid 4EI5 [ 5 ] 4EI6 [ 5 ] 2AKR [ 18 ] XV19 Type II NKT CD1d-sulfatide 1.08 Medium 4LHU [ 9 ] 4LFH [ 9 ] 1ZT4 [ 17 ] 9C2 γδ CD1d-α-GalCer 0.90 Rigid 4MNG [ 10 ] 4MNH [ 10 ] 4MQ7 [ 10 ] DP10.7 γδ CD1d-sulfatide 0.68 Rigid 4L4T [ 8 ] 3 4DZB [ 19 ] 3 4GUP [ 3 ] MAIT MAIT MR1-6FP 0.87 Rigid 1 Backbone atom root-mean-square distance between interface residues in the bound structure and corresponding residues in the unbound structures.
Publication Year: 2014
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