Primary Citation PubMed: 16177781
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Structure of complement fragment C3b-factor H and implications for host protection by complement regulators.
(2009) Nat Immunol 10
PubMed: 19503104 | PubMedCentral: PMC2713992 | DOI: 10.1038/ni.1755
First, the β-chain (residues 1–642) of C3c (pdb code 2A74) 19 was placed, followed by the stepwise addition of TED, CUB and α’NT-MG7-MG8 domains from C3b (pdb code: 2I0... ) 14 .
Publication Year: 2009
Structural and functional implications of the alternative complement pathway C3 convertase stabilized by a staphylococcal inhibitor.
PubMed: 19503103 | PubMedCentral: PMC2729104 | DOI: 10.1038/ni.1756
The structure was solved by molecular replacement by PHASER 46 using the isolated structures of C3c (pdb code: 2A74) 32 , C3b (pdb code: 2I07) 15 , Bb (pdb code: 1RRK) 24 and SCIN (pdb code: 2QFF) 14 ... s the initial search models.
Evaluating the solution from MrBUMP and BALBES.
(2011) Acta Crystallogr D Biol Crystallogr 67
PubMed: 21460449 | PubMedCentral: PMC3069746 | DOI: 10.1107/S0907444911007530
The model comes from PDB file 2a74 and contains 1109 residues.
Publication Year: 2011
LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy.
(2012) Mol Cell 48
PubMed: 23022382 | PubMedCentral: PMC3510444 | DOI: 10.1016/j.molcel.2012.08.024
The closest structural homolog of the SKICH domain is present in the human C3 complement component, which is comprised of multiple Ig and Ig-like folds (pdb-id 2a74, ( Janssen et al., 2005 ), ... ALI Z-score 8.3).
Publication Year: 2012
Zinc-induced self-association of complement C3b and Factor H: implications for inflammation and age-related macular degeneration.
(2013) J Biol Chem 288
PubMed: 23661701 | PubMedCentral: PMC3696691 | DOI: 10.1074/jbc.M113.476143
The PDB codes are 2A73 for C3 ( A ), 3MMQ for C3u ( B ), 2I07 for C3b ( C ), 2A74 for C3c and 1C3D for C3d ( D ).
Name PDB code Number of C3 domains Number of residues in the PDB file Unique zinc binding residues predicted METSITE >0.7 Number of unique zinc binding residues per 100 residues C3 2A73 13 1611 38 2.4 C3b 2ICF 12 1545 45 2.9 C3b 2I07 12 1531 27 1.8 C3u 3MMQ 13 1531 28 1.8 C3c 2A74 10 1109 17 1.5 C3d 1C3D 1 294 3 1.0 C3d 1GHQ 1 307 4 1.3 The front and back surfaces of the five C3 proteins showed that the partial zinc binding site predictions were broadly distributed ( Fig. 8 ).
The predictions used crystal structures for C3 (PDB code 2A73 ) ( 4 ), C3b (PDB codes 2I07 and 2ICF ) ( 51 , 52 ), C3c (PDB code 2A74 ) ( 4 ), and C3d (PDB codes 1C3D and 1GHQ ( 53 , 54 ), and a solution structure for C3u (PDB code 3MMQ ) ( 43 ).
Publication Year: 2013
A revised mechanism for the activation of complement C3 to C3b: a molecular explanation of a disease-associated polymorphism.
(2015) J Biol Chem 290
PubMed: 25488663 | PubMedCentral: PMC4303685 | DOI: 10.1074/jbc.M114.605691
Scattering and Sedimentation Modeling of C3, C3u, C3b, C3c, and C3d The scattering modeling of human C3, C3c, and C3d utilized their crystal structures (Protein Data Bank codes 2A73 , 2A74 , and 1C3D ... respectively).
Publication Year: 2015
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