Citations in PubMed

Primary Citation PubMed: 9030780 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Prediction of specificity-determining residues for small-molecule kinase inhibitors.

(2008) BMC Bioinformatics 9

PubMed: 19032760 | PubMedCentral: PMC2655090 | DOI: 10.1186/1471-2105-9-491

The 3D structure of CDK2 (PDB 2A4L , wire rendering with grey carbons) was superposed onto the structure of HCK (hidden) in complex with PP1 (PDB 1QCF , ball and stick rendering with green carbons).

The 3D structure of CDK2 (PDB 2A4L , wire rendering with grey carbons) was superposed onto the structure of MK2 (hidden) in complex with PHA-00781089 (PDB 2P3G , ball and stick rendering with green carbons).

The 3D structure of p38 (PDB 2GTM , wire rendering with grey carbons) was superposed onto the structure of CDK2 (hidden) in complex with Roscovitine (PDB 2A4L , ball and stick rendering with green carbons).

Table 1 S-Filter predictions Compound Primary target PDB Predictions FN FP TN TP Total SB-203580 p38 1A9U Leu 104 Thr 106 0 0 14 2 16 PHA-00781089 MK2 2P3G Cys 140 Gly 143 0 1 18 1 20 Roscovitine CDK2 2A4L Val 64 Leu 83 Ala 144 0 2 20 1 23 PP1 SRC/HCK 1QCF Thr 338 Gly 344 0 1 18 1 20 OSI-774 EGFR 1M17 Thr 766 Cys 773 0 1 19 1 21 GW-572016 EGFR 1XKK Cys 775 2 0 23 1 26 Fasudil ROCK1 2ESM Val 137 Met 153 Ala 215 1 2 14 1 17 Predicted specificity determinants are shown for each compound and are either designated as false positives (FP) or true positives (TP).

Publication Year: 2008


EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities.

(2011) Nucleic Acids Res 39

PubMed: 21051336 | PubMedCentral: PMC3013767 | DOI: 10.1093/nar/gkq878

Case study 1: identifying cyclin dependent kinases inhibitors As a test for the pharmacaphore searching routine we used the eight available structures of CDK complexes stored in the PDBbind database (... 27 ) with PDB codes 1AQ1, 1DI8, 1DM2, 1E1V, 1E1X, 1FVV, 1UNH and 2A4L.

Publication Year: 2011


Identification and structural-functional analysis of cyclin-dependent kinases of the cattle tick Rhipicephalus (Boophilus) microplus.

(2013) PLoS One 8

PubMed: 24146826 | PubMedCentral: PMC3795742 | DOI: 10.1371/journal.pone.0076128

When this in silico analysis was compared with experimental observations that show the binding of roscovitine to human CDK2 (PDB ID: 2A4L; [29] , for example, the putative ATP binding sites of our 3D ... odels adopt a more closed conformation, and impairs the interaction with other proteins ( Figure S7 ).

Publication Year: 2013


PubMed ID is not available.

Published in 2015

PubMedCentral: PMC4463590

The cyan and fuchsia patterns indicate the monomeric CDK2 (coordinates 2A4L) and the phosphorylated CDK2/cyclin A dimer (3DDQ) in a complex with roscovitine, respectively.

Panel ( A ) displays the competitive binding site of the monomer CDK2 with inhibitor roscovitine (coordinates 2A4L); the detailed information of amino acids in this cavity is shown in panel ( B ).

Publication Year: 2015