Citations in PubMed

Primary Citation PubMed: 16007090 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Structure and binding kinetics of three different human CD1d-alpha-galactosylceramide-specific T cell receptors.

(2006) J Exp Med 203

PubMed: 16520393 | PubMedCentral: PMC2118257 | DOI: 10.1084/jem.20052369

Docking models ( Fig. 5, A–C ) were generated for the iNKT, 5B, and 5E TCR crystal structures described above and the previously reported crystal structure of human CD1d–α-GalC... r (PDB code 1ZT4) ( 16 ).

Subsequently, human CD1d–α-GalCer (accession no. 1ZT4; reference 16) was superimposed onto the position of dEV8-H-2K b in the TCR–pMHC complex based on superposition of the α1/α2 domains.

Publication Year: 2006


The length of lipids bound to human CD1d molecules modulates the affinity of NKT cell TCR and the threshold of NKT cell activation.

(2007) J Exp Med 204

PubMed: 17485514 | PubMedCentral: PMC2118584 | DOI: 10.1084/jem.20062342

The structural effects of binding lipid chains of various lengths to hCD1d were assessed by comparison of the hCD1d–α-GalCer and empty hCD1d crystal structures (Protein Data Bank code ... ZT4).

Publication Year: 2007


The molecular basis for recognition of CD1d/?-galactosylceramide by a human non-V?24 T cell receptor.

(2012) PLoS Biol 10

PubMed: 23109910 | PubMedCentral: PMC3479090 | DOI: 10.1371/journal.pbio.1001412

The structure of the ternary complex was solved by molecular replacement with the program Phaser [31] using the human CD1d–β2m (Protein Data Bank (PDB) accession number 1ZT4) and an iN... T Vα24+ TCR (2EYS) as search models.

Publication Year: 2012


Crystal structures of bovine CD1d reveal altered ?GalCer presentation and a restricted A' pocket unable to bind long-chain glycolipids.

(2012) PLoS One 7

PubMed: 23110152 | PubMedCentral: PMC3479135 | DOI: 10.1371/journal.pone.0047989

Superposition of the entire boCD1d heavy chain from the di-sulfatide complex with that of huCD1d and mCD1d yielded rmsd values of 0.92 Å (PDB 1ZT4) and 1.13 Å (PDB 1Z5L), respectively,... indicating a very similar topology of the boCD1d molecules.

(D) Superposition of the A’ pocket of boCD1d and huCD1d, with C 12∶0 -di-sufatide (yellow), C 16∶0 -αGalCer (grey) and C 26∶0 -αGalCer (green, from PDB ID 1ZT4) shown.

Publication Year: 2012


The effect of intracellular trafficking of CD1d on the formation of TCR repertoire of NKT cells.

(2014) BMB Rep 47

PubMed: 24755556 | PubMedCentral: PMC4163858 | DOI: null

PDB accession numbers are 2VAA (MHC I) and 1ZT4 (CD1d).

Publication Year: 2014


Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.

(2014) BMC Bioinformatics 15

PubMed: 25260513 | PubMedCentral: PMC4261541 | DOI: 10.1186/1471-2105-15-319

Table 1 The TCR-CD1d-Ag and TCR-MR1-Ag test cases PDB code Complex TCR Ligand TCR name TCR type Ligand name Binding RMSD 1 , Å Difficulty 2 3HUJ [ 15 ] 2EYS [ 16 ] 1ZT4 [ 17 ] NKT15 Type I NKT... CD1d-α-GalCer 1.04 Rigid 4EI5 [ 5 ] 4EI6 [ 5 ] 2AKR [ 18 ] XV19 Type II NKT CD1d-sulfatide 1.08 Medium 4LHU [ 9 ] 4LFH [ 9 ] 1ZT4 [ 17 ] 9C2 γδ CD1d-α-GalCer 0.90 Rigid 4MNG [ 10 ] 4MNH [ 10 ] 4MQ7 [ 10 ] DP10.7 γδ CD1d-sulfatide 0.68 Rigid 4L4T [ 8 ] 3 4DZB [ 19 ] 3 4GUP [ 3 ] MAIT MAIT MR1-6FP 0.87 Rigid 1 Backbone atom root-mean-square distance between interface residues in the bound structure and corresponding residues in the unbound structures.

Publication Year: 2014


PubMed ID is not available.

Published in 2014

PubMedCentral: PMC4267242

The 9B4 TCR–CD1d–α-GalCer ternary complex was solved by molecular replacement using PHASER with three separate search ensembles: CD1d without α-GalCer, TCR minus the V&... x003b1; domain and CDRβ loops, and Vδ1 minus the CDRδ loops (derived from PDB codes 1ZT4 [ Koch et al., 2005 ], 4DZB [ Reantragoon et al., 2012 ], and 4LFH [ Uldrich et al., 2013 ], respectively).

Publication Year: 2014