Citations in PubMed

Primary Citation PubMed: 15809432 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Towards third generation matrix metalloproteinase inhibitors for cancer therapy.

(2006) Br J Cancer 94

PubMed: 16538215 | PubMedCentral: PMC2361222 | DOI: 10.1038/sj.bjc.6603043

The catalytic domains of MMP3 (PDB:1CIZ), MMP8 (PDB: 1KBC), MMP9 (PDB:1GKD) and MMP12 (PDB: 1Y93) were structurally aligned and superimposed.

Publication Year: 2006

Analysis of X-ray structures of matrix metalloproteinases via chaotic map clustering.

(2010) BMC Bioinformatics 11

PubMed: 20932281 | PubMedCentral: PMC3098083 | DOI: 10.1186/1471-2105-11-500

sub-families classes PDB codes archetypal MMPs MMP-1 1CGE, 966C, 1HFC, 2TCL, 1CGL, 1CGF, 2J0T Collagenasi MMP-8 1MNC, 1ZS0, 1ZP5, 1MMB, 1JAO, 1JAP, 1JAQ, 1JJ9, 1I76, 1I73, 1ZVX, 1BZS, 1KBC, 1JAN, 1A86... 1A85, 1JH1, 3DNG, 3DPE, 3DPF, 2OY2, 2OY4 MMP-13 1XUC, 1XUR, 1XUD, 1YOU, 830C, 456C, 1ZTQ, 2D1N, 1CXV, 2PJT, 2OW9, 2E2D, 2OZR metallo-elastase MMP-12 1Y93, 1RMZ, 1OS9, 1OS2, 1UTZ, 1UTT, 1JIZ, 1ROS, 1JK3, 3F15, 3F16, 3F17, 3F18, 3F19, 3F1A, 2W0D, 2HU6, 2OXU, 2OXW, 2OXZ Stromelysin MMP-3 1B8Y, 1CIZ, 1CAQ, 1G4K, 2USN, 1USN, 1SLM, 1UEA, 1HFS, 1QIC, 1C3I, 1CQR, 1BQO, 1BIW, 1SLN, 1HY7, 1G05, 1G49, 1D5J, 1D8F, 1D7X, 1D8M, 2D1O, 1B3D, 1QIA, 1C8T MMP-10 1Q3A matrilysin Matrilysin MMP-7 1MMP, 1MMQ, 1MMR gelatinases Gelatinase MMP-9 1GKC, 1GKD, 2OVX, 2OVZ, 2OW0, 2OW1, 2OW2 MMP-2 1QIB convertase-activatable MMPs MT-MMPs MMP-14 1BUV, 1BQQ MMP-16 1RM8 stromelysin-3 MMP-11 1HV5 After removing water molecules and co-crystallised inhibitors, MMPs were aligned onto Cartesian coordinates of C-alpha atoms and the three catalytic histidine side chains of 1ZS0, selected as template.

Publication Year: 2010

Structure-based design, synthesis, molecular docking, and biological activities of 2-(3-benzoylphenyl) propanoic acid derivatives as dual mechanism drugs.

(2012) J Pharm Bioallied Sci 4

PubMed: 22368397 | PubMedCentral: PMC3283955 | DOI: 10.4103/0975-7406.92728

Docking of the synthesized compounds into MMPs Results of the molecular docking study revealed that the compounds (2) and (3) docked into the active sites of MMP-1, -2, -3, -7, -8, -9, -12, and -13 (P... B entry: 3AYK, 1HOV, 2JT5, 1MMQ, 3DPE, 1GKC, 1Y93, and 2D1N, respectively) exhibited their binding interactions in a similar fashion to the native cocrystallized ligands of the respective enzymes [ Figure 3 ].

Publication Year: 2012

Strategic targeting of multiple water-mediated interactions: a concise and rational structure-based design approach to potent and selective MMP-13 inhibitors.

(2013) ChemMedChem 8

PubMed: 23894097 | PubMedCentral: PMC4281860 | DOI: 10.1002/cmdc.201300278

image WILEY-VCH Furthermore, molecular modeling of 4 within the S1′ binding sites of MMP‐2 (PDB 3AYU), 12 MMP‐12 (PDB 1Y93), 13 and MMP‐14 (PDB 3MA2) 14 indicated that ... does not fit into the MMP‐2, MMP‐12 and MMP‐14 binding sites due to a clash in the selectivity loop deep within the S1′ pocket.

Publication Year: 2013