Citations in PubMed

Primary Citation PubMed: 15591044 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Crystal structure and RNA binding of the Rpb4/Rpb7 subunits of human RNA polymerase II.

(2005) Nucleic Acids Res 33

PubMed: 16282592 | PubMedCentral: PMC1283528 | DOI: 10.1093/nar/gki945

A similar superposition onto the higher resolution (2.3 Å) but less complete crystal structure of the isolated yeast heterodimer (PDB entry 1y14) results in 249 Cα atoms within 4 ... 2b; (rmsd 0.61 Å).

The secondary structure of the human protein determined using DSSP ( 33 ) is indicated above the sequences while secondary structural elements in the yeast (PDB entry 1y14) and M.jannaschii (PDB entry 1go3) proteins are indicated by boxes.

Publication Year: 2005


InterEvol database: exploring the structure and evolution of protein complex interfaces.

(2012) Nucleic Acids Res 40

PubMed: 22053089 | PubMedCentral: PMC3245184 | DOI: 10.1093/nar/gkr845

The interest of the InterEvol database is precisely to provide the structural solution to that question since the complex from S. cerevisiae (pdb:1y14) was identified as a structural interolog.

The example focuses on the Rpb4-Rpb7 complex crystallized in both H. sapiens (pdb code:2c35) and S. cerevisiae (pdb code:1y14).

The InterEvol PyMol plugin can be very helpful in revealing compensatory changes at interfaces in a complex such as the conserved Rpb4-Rpb7 interaction for which InterEvol identified 4 structural interologs including one in Homo sapiens (pdb: 2c35) and another from Saccharomyces cerevisiae (pdb: 1y14).

Publication Year: 2012


Versatility and invariance in the evolution of homologous heteromeric interfaces.

(2012) PLoS Comput Biol 8

PubMed: 22952442 | PubMedCentral: PMC3431345 | DOI: 10.1371/journal.pcbi.1002677

(B) Illustration of atomic contacts at interface (red links), on the example of two interologous interfaces sharing 33% minimum interface sequence identity, between subunits of RNA polymerase 2 in yea... t (upper complex, PDB id 1y14) and in human (lower complex, PDB id 2c35).

(A) Two interologous interfaces sharing 33%; minimum interface sequence identity, between subunits of RNA polymerase 2 in yeast (upper complex, PDB id 1y14) and in human (lower complex, PDB id 2c35); in this case, contact conservation between patches is 84%.

Publication Year: 2012