Citations in PubMed

Primary Citation PubMed: 15525646 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Conservation, variability and the modeling of active protein kinases.

(2007) PLoS One 2

PubMed: 17912359 | PubMedCentral: PMC1989141 | DOI: 10.1371/journal.pone.0000982

* Kinase Full name Species PDB code Pfam domain (residues) ACK1 activated CDC42 kinase 1 H. sapiens 1U54 [46] Protein tyrosine kinase (126-385) Akt2 RAC-β serine/threon... ne-protein kinase H. sapiens 1O6K [25] Protein kinase (152-409) CDK2 cell division protein kinase 2 H. sapiens 1JST [47] Protein kinase (4-286) CK1 casein kinase I S. pombe 1CSN [48] Protein kinase (12-237) CK2 casein kinase II subunit α Z. mays 1LP4 [49] Protein kinase (34-319) DAPK death-associated protein kinase H. sapiens 1IG1 [50] Protein kinase (13-275) IRK insulin receptor tyrosine kinase H. sapiens 1IR3 [51] Protein tyrosine kinase (1023-1290) MAPK p38γ mitogen-activated protein kinase p38γ H. sapiens 1CM8 [52] Protein kinase (27-311) PhK phosphorylase kinase O. cuniculus 1PHK [53] Protein kinase (19-287) Pim-1 proto-oncogene serine/threonine-protein kinase Pim-1 H. sapiens 1XR1 [54] Protein kinase (129-381) PKA protein kinase A M. musculus 1ATP [23] Protein kinase (43-297) PknB probable serine/threonine-protein kinase PknB M. tuberculosis 1MRU [55] Protein kinase (11-273) Rio2 Rio2 serine kinase A. fulgidus 1ZAO [56] Rio1 family (105-275) Sky1P SR protein kinase S. cerevisiae 1Q97 [57] Protein kinase (158-706) † TAO2 thousand and one amino-acid protein 2 R. norvegicus 1U5R [58] Protein kinase (28-281) ChaK ‡ transient receptor potential channel kinase M. musculus 1IA9 [2] Alpha kinase (1596-1814) * The average pair-wise sequence identity between this set as computed by ClustalW using its default parameters is 17%.

Publication Year: 2007

Binding of protein kinase inhibitors to synapsin I inferred from pair-wise binding site similarity measurements.

(2010) PLoS One 5

PubMed: 20808948 | PubMedCentral: PMC2922380 | DOI: 10.1371/journal.pone.0012214

PDB a d2 b Name HET c 2oxd 0.1008 Casein kinase II subunit alpha K32 2oxx 0.1038 Casein kinase II subunit alpha K22 1yi3 0.1056 Proto-oncogene serine/threonine-protein kinase Pim-1 LY2 1tqm 0.1083 RIO... type serine/threonine-protein kinase Rio2 ANP 3cy3 0.1176 Proto-oncogene serine/threonine-protein kinase Pim-1 JN5 3bgz 0.1199 Proto-oncogene serine/threonine-protein kinase Pim-1 VX3 3cy2 0.1233 Proto-oncogene serine/threonine-protein kinase Pim-1 MB9 2bik 0.1327 Proto-oncogene serine/threonine-protein kinase Pim-1 BI1 2c1a 0.1339 Protein kinase A I5S 1xr1 0.1350 Proto-oncogene serine/threonine-protein kinase Pim-1 ANP 1bl6 0.1368 Mitogen-activated protein kinase 14 SB6 1q8u 0.1385 cAMP-dependent protein kinase catalytic subunit alpha H52 3bi6 0.1388 Wee1-like protein kinase 396 3biz 0.1395 Wee1-like protein kinase 61E 2i0e 0.1400 Protein kinase C beta type PDS 1cm8 0.1405 Mitogen-activated protein kinase 12 ANP 2uzv 0.1423 cAMP-dependent protein kinase catalytic subunit alpha SS5 1yi4 0.1456 Proto-oncogene serine/threonine-protein kinase Pim-1 ADN 2hen 0.1467 Ephrin type-B receptor 2 ADP 2rkp 0.1474 Casein kinase II subunit alpha RFZ 2ojg 0.1481 Mitogen-activated protein kinase 1 19A 2z7s 0.1481 Ribosomal protein S6 kinase alpha-1 P01 2csn 0.1482 Casein kinase I homolog 1 CKI 1yhs 0.1483 Proto-oncogene serine/threonine-protein kinase Pim-1 STU 1mu 0.1508 Serine/threonine-protein kinase 6 ADN a PDB entry [10] .

Publication Year: 2010

Deciphering the Arginine-binding preferences at the substrate-binding groove of Ser/Thr kinases by computational surface mapping.

(2011) PLoS Comput Biol 7

PubMed: 22125489 | PubMedCentral: PMC3219626 | DOI: 10.1371/journal.pcbi.1002288

Mean solution Most accurate solution Kinase family Kinase name Bound structure Unbound structure Model Rank ΔG [Kcal/mol] Cζ distance Model Rank RMSD (Å) 1 AGC PKA 1JLU 1BKX 1 ... #x02212;11.7 1.3 2 1.6 2 PKB a 1O6K 3D0E 1 (8) −7.4(−5.1) 1.7(1.7) 9 1.3 3 CAMK PIM1 2BIL 1XR1 1 −14.7 2.6 2 1.6 4 STE PAK4 2Q0N 2CDZ 1 −8.3 1.6 4 1.9 The RMSD between the ANCHORSmap-identified and the experimental Arg-binding positions was calculated over all heavy atoms of the Arg residue, apart from the Cβ atom.

Publication Year: 2011

Crystal structure of pim1 kinase in complex with a pyrido[4,3-d]pyrimidine derivative suggests a unique binding mode.

(2013) PLoS One 8

PubMed: 23936194 | PubMedCentral: PMC3729456 | DOI: 10.1371/journal.pone.0070358

(B) SKI-O-068 (orange) superposition with two AMPPNPs (1XR1 and 1YXT; gray).

In two AMPPNP-bound structures (PDB codes 1XR1 and 1YXT), the phosphate groups, and adenosine moieties contact Lys67 and Glu121, respectively [10] , [14] .

Publication Year: 2013