Primary Citation PubMed: 15667209
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Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking.
(2009) BMC Struct Biol 9
PubMed: 19493341 | PubMedCentral: PMC2699341 | DOI: 10.1186/1472-6807-9-39
Methods Preparation of protein structures and substrates X-ray structures of CALB (1LBS, 1LBT, 1TCA, 1TCB, 1TCC), CRL (1CLE, 1CRL, 1LPM, 1LPN, 1LPO, 1LPP, 1LPS), BCL (2LIP, 3LIP, 4LIP, 5LIP, 1OIL, 1YS... , 1YS2), TcAChE (1CFJ, 1DX6, 1E3Q, 1EVE, 1VXR, 1QIM), and huBuChE (1P0M, 1XLU, 1XLV, 1XLW) were retrieved from the Protein Data Bank [ 1 ] .
Table 6 RMSD of human butyrylcholine esterase after optimization All-atom RMSD [Å] total choline pocket 1P0M/ACh 0.49 0.29 (59%) a 1P0M/BuCh 0.50 0.33 (66%) a 1XLU/ACh 0.50 0.55 (109%) 1XLU/BuCh 0.48 0.54 (113%) 1XLV/ACh 0.52 0.57 (109%) 1XLV/BuCh 0.50 0.57 (113%) 1XLW/ACh 0.48 0.54 (113%) 1XLW/BuCh 0.52 0.56 (107%) All-atom RMSD of the choline pocket of huBuChE in comparison to the all-atoms RMSD of the whole protein after geometry optimisation.
¿From the four huBuChE X-ray structures, one had been resolved with a non-covalently bound product molecule (1P0M) and three had been resolved in a covalent complex with a small substrate analogous inhibitor (1XLU, 1XLV, 1XLW).
Publication Year: 2009
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