Primary Citation PubMed: 15660127
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A cancer-derived mutation in the PSTAIRE helix of cyclin-dependent kinase 2 alters the stability of cyclin binding.
(2010) Biochim Biophys Acta 1803
PubMed: 20399812 | PubMedCentral: PMC3111755 | DOI: 10.1016/j.bbamcr.2010.04.004
The cdk2 starting structure (PDB code: 2CLX, resolution 1.8 Å with the ligand removed from the active site  ) and the starting structure for pT160-cdk2/ATP complexed with Cyclin E ... as taken from PDB (PDB code: 1W98, resolution 2.15 Å  , where ATP and Mg 2+ was added from 1JST structure  ).
Publication Year: 2010
Intrinsic disorder mediates the diverse regulatory functions of the Cdk inhibitor p21.
(2011) Nat Chem Biol 7
PubMed: 21358637 | PubMedCentral: PMC3124363 | DOI: 10.1038/nchembio.536
Cdk/cyclin complex Distance (Å) 1 PDB ID Cdk2/cyclin A 36.2 1JST 17 Cdk2/cyclin B1 36.5 2JGZ 36 Cdk2/cyclin E1 35.8 1W98 37 Cdk4/cyclin D1 34.0 2W96 38 Cdk4/cyclin D3 34.0 3G33 39 1 Distances ... ere measured between the C α atoms of a conserved Val residue in the Cdks (Val 30 in Cdk2 and Val 32 in Cdk4) and a conserved Leu residue in the cyclins [Leu 255 in cyclin A, Leu 190 (isoform 1) in cyclin E1, Leu 246 in cyclin B, and Leu 101 in cyclins D1 and D3].
Publication Year: 2011
Molecular evolution of cyclin proteins in animals and fungi.
(2011) BMC Evol Biol 11
PubMed: 21798004 | PubMedCentral: PMC3162929 | DOI: 10.1186/1471-2148-11-224
Representative proteins with known 3D structures for the A, B1/B2, E and D cyclin families we taken from the PDB database [ 70 ]: 1H1R:B (KEGG ID 890) for cyclin A family; 2W9Z (KEGG ID 595) for cycli... D family; 2B9R:A (KEGG ID 891) for cyclins of B1, B2 families; 1W98:B (KEGG ID 898) for cyclins of E family.
Mutual information and variants for protein domain-domain contact prediction.
(2012) BMC Res Notes 5
PubMed: 23244412 | PubMedCentral: PMC3532072 | DOI: 10.1186/1756-0500-5-472
For all pdbs listed, the start and end residues are located in chain A of the structure, except for pdb 1W98 where the mentioned domains are in chain B, and pdb 8TLN in chain E.
Publication Year: 2012
Molecular basis of differential selectivity of cyclobutyl-substituted imidazole inhibitors against CDKs: insights for rational drug design.
(2013) PLoS One 8
PubMed: 24058495 | PubMedCentral: PMC3772847 | DOI: 10.1371/journal.pone.0073836
Materials and Methods Simulation Details The initial structures of inhibitor-bound CDK2/Cyclin E and CDK5/p25 complexes were obtained by docking the inhibitors in the available crystal structures of a... tive CDK2 (PDB ID: 1W98) and CDK5 (PDB ID: 3O0G)  ,  .
Publication Year: 2013
Drug targets for cell cycle dysregulators in leukemogenesis: in silico docking studies.
(2014) PLoS One 9
PubMed: 24454966 | PubMedCentral: PMC3893288 | DOI: 10.1371/journal.pone.0086310
Methods The crystal structures of the 6 proteins-CCNE1 (PDB ID: 1W98), CDK6 (PDB ID: 3NUP), CCND1 (PDB ID: 2W96), CCND3 (PDB ID: 3G33), CDK2 (PDB ID: 1W98) and CCNA1 (PDB ID: 1FIN) were retrieved from... RCSB Protein Data Bank (PDB) ( www.rcsb.org/pdb/home/home.do ).
Publication Year: 2014
PubMed ID is not available.
Published in 2015
Two other structures, the cyclin D3 chain (chain B) in 3G33 (PDB ID) and the cyclin E1 chain (chain B) in 1W98 (PDB ID), were chosen for reference as well.
Honda R , Lowe ED , Dubinina E , Skamnaki V , Cook A , Brown N , Johnson LN , 2005 , The structural basis of CDK2 activation by cyclin E , http://www.pdb.org/pdb/explore/explore.do?structureId=1W98 , Publicly available at RCSB Protein Data Bank.
Publication Year: 2015
Cyclins A and E contain 260 (PDB code 1FIN, residues 173–432) [ 6 ] and 283 amino acids (PDB code 1W98, residues 96–378) [ 91 ], respectively.
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