Citations in PubMed

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PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

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PDB ID Mentions in PubMed Central

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Hsp90 inhibitors, part 2: combining ligand-based and structure-based approaches for virtual screening application.

(2014) J Chem Inf Model 54

PubMed: 24555544 | PubMedCentral: PMC3985681 | DOI: 10.1021/ci400760a

Figure 3 The most active screened compounds in their BC system (protein and pose) overlapped with 2YK2( 16 ) (Hit 1 in orange, Hit 2 in cyan, protein in cyan): (A) NCI610930 in 1UYC (ligand and protei... in green), (B) NCI117285 in 1UY8 (ligand in yellow, protein in magenta), and (C) NCI170578 in 1UY8 (ligand and protein in magenta).

Table 1 RMSD and AA Values Calculated between the Random (RC) and Experimental Conformations (EC) in the Realignment and Cross-Alignment Processes (RCRA and RCCA, Respectively)     RCRA ECCA RCCA entry a PDB code RC vs EC EC vs all RC vs all 1 1UY8 0.46 0.37 0.52 2 1UYC 0.47 0.45 0.49 3 1UYD 0.7 0.36 0.43 4 1UYE 0.69 0.55 0.6 5 1UYG 0.41 0.74 0.65 6 1UYH 0.46 0.38 0.49 7 1UYK 0.62 0.26 0.56 13 2BT0 0.58 0.33 0.48 14 2CCS 0.46 0.64 0.74 16 2CCU 0.8 3.5 3.8 17 3B25 0.48 0.39 0.21 18 3B26 0.5 0.6 0.35 20 3B28 0.71 0.55 0.45 21 3OWB 0.65 0.74 0.7 22 3OWD 0.98 0.3 0.81           AA b   100 93.33 93.33 a Entry numbers are referred to those reported in Table 1 of reference ( 5 ) b Alignment accuracy, which refers to the fraction of correct and partially correct aligned structures (RMSD values of <2 Å and <3 Å, respectively), and it is explained by eq 1 .

Publication Year: 2014