Citations in PubMed

Primary Citation PubMed: 14700633 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 7

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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GSK-3?: A Bifunctional Role in Cell Death Pathways.

(2012) Int J Cell Biol 2012

PubMed: 22675363 | PubMedCentral: PMC3364548 | DOI: 10.1155/2012/930710

Image was made using PyMol Molecular Graphics Software version 1.3 with the PDB structure 1UV5.

Publication Year: 2012

Small-Molecule Inhibitors of GSK-3: Structural Insights and Their Application to Alzheimer's Disease Models.

(2012) Int J Alzheimers Dis 2012

PubMed: 22888461 | PubMedCentral: PMC3408674 | DOI: 10.1155/2012/381029

PDB code 1UV5 [ 63 ].

Several small-molecule inhibitor/GSK-3 complexes can be extracted from the Protein Data Bank (PDB) (PDB codes: 3PUP (15), 1Q4L (25), 1Q3D (25), 1Q41 (25), 1Q3W (25), 1R0E (34), 2OW3 (40), 2JLD (55), 3M1S (56), 1UV5 (65), 3I4B (113), 3F7Z (119), 3F88 (119), 3GB2 (120), 1Q5K (124), 2O5K (127), 3L1S (130), 3Q3B (136), 1I09 (138)).

Publication Year: 2012

Implementation of multiple-instance learning in drug activity prediction.

(2012) BMC Bioinformatics 13 Suppl 15

PubMed: 23046442 | PubMedCentral: PMC3439725 | DOI: 10.1186/1471-2105-13-S15-S3

Table 8 Validations on the prediction of bioactive conformers ID a Name b PDB ID c Contribution d Rank e n i f 23 AR 1Q5K 2.792 3 117 37 Benzoimidazole-1 2O5K 0 N.A. g 138 50 Jonjon-1 2OW3 2.827 6 38 ... 9 LM-4 1Q3W 0.858 1 2 60 LM-5 1UV5 11.941 1 3 77 LM-29 1Q41 8.576 2 7 97 Maleimide 1R0E 0 N.A. g 121 98 OxaD-0 3F7Z 10.629 1 53 99 OxaD-00 3GB2 4.637 2 9 153 Pyzo-11 3L1S 10.371 1 11 198 RM-0 1Q4L 5.568 2 25 199 Staurosporine 1Q3D 22.359 1 5 a Molecule index in the data set; b molecular name in the data set; c Protein Data Bank index for the protein structure from which the experimental conformer was extracted; d contribution f C i j * calculated using equation 6; e the rank in the set of contributions; f the number of conformers for each molecule; g the rank cannot be determined and the conformer was predicted to be irrelevant to classification based on the MILES method.

Publication Year: 2012

Novel Inverse Binding Mode of Indirubin Derivatives Yields Improved Selectivity for DYRK Kinases.

(2013) ACS Med Chem Lett 4

PubMed: 23336033 | PubMedCentral: PMC3545483 | DOI: 10.1021/ml300207a

11 − 17 Regardless of the notable selectivity of the various indirubin analogues, they all share a common interaction pattern with their target enzyme active site (for example, see PDB structu... es 1E9H, 2BHE, 1UV5, and 1UNH).

Publication Year: 2013

Drug activity prediction using multiple-instance learning via joint instance and feature selection.

(2013) BMC Bioinformatics 14 Suppl 14

PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16

The selected conformers are clustered into eight groups based on their shape complementarity to the receptor grids (PDB IDs: 1Q3W, 1Q4L, 1R0E, 1UV5, 2OW3, F88, 3GB2, 3ZRM).

Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, 2O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).

Publication Year: 2013

The role of CDK5 and GSK3B kinases in hyperphosphorylation of microtubule associated protein tau (MAPT) in Alzheimer's disease.

(2013) Bioinformation 9

PubMed: 24497730 | PubMedCentral: PMC3910359 | DOI: 10.6026/97320630091023

Results Protein Models : The crystal structures of CDK5 (PDB id: 1UNH_A) and GSK3B (PDB id: 1UV5) being available were directly retrieved from PDB database [ 21 ].

Publication Year: 2013

An inhibitor-driven study for enhancing the selectivity of indirubin derivatives towards leishmanial Glycogen Synthase Kinase-3 over leishmanial cdc2-related protein kinase 3.

(2014) Parasit Vectors 7

PubMed: 24886176 | PubMedCentral: PMC4039064 | DOI: 10.1186/1756-3305-7-234

Computational analysis Homology models were built for L GSK-3 and L CRK3 of three Leishmania species (L. major, L. donovani, L. infantum- Uniprot codes Q4QE15, A6N857, A4HXQ3, O96526, Q7K8Z1, A4ICT0 )... using Prime 3.1 and the corresponding cocrystal structures of human GSK-3 and CDK5 with indirubin (pdb codes 1UV5, 1UNH) as templates [ 30 ].

Publication Year: 2014