Primary Citation PubMed: 14700633
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GSK-3?: A Bifunctional Role in Cell Death Pathways.
(2012) Int J Cell Biol 2012
PubMed: 22675363 | PubMedCentral: PMC3364548 | DOI: 10.1155/2012/930710
Image was made using PyMol Molecular Graphics Software version 1.3 with the PDB structure 1UV5.
Publication Year: 2012
Small-Molecule Inhibitors of GSK-3: Structural Insights and Their Application to Alzheimer's Disease Models.
(2012) Int J Alzheimers Dis 2012
PubMed: 22888461 | PubMedCentral: PMC3408674 | DOI: 10.1155/2012/381029
PDB code 1UV5 [ 63 ].
Several small-molecule inhibitor/GSK-3 complexes can be extracted from the Protein Data Bank (PDB) (PDB codes: 3PUP (15), 1Q4L (25), 1Q3D (25), 1Q41 (25), 1Q3W (25), 1R0E (34), 2OW3 (40), 2JLD (55), 3M1S (56), 1UV5 (65), 3I4B (113), 3F7Z (119), 3F88 (119), 3GB2 (120), 1Q5K (124), 2O5K (127), 3L1S (130), 3Q3B (136), 1I09 (138)).
Implementation of multiple-instance learning in drug activity prediction.
(2012) BMC Bioinformatics 13 Suppl 15
PubMed: 23046442 | PubMedCentral: PMC3439725 | DOI: 10.1186/1471-2105-13-S15-S3
Table 8 Validations on the prediction of bioactive conformers ID a Name b PDB ID c Contribution d Rank e n i f 23 AR 1Q5K 2.792 3 117 37 Benzoimidazole-1 2O5K 0 N.A. g 138 50 Jonjon-1 2OW3 2.827 6 38 ... 9 LM-4 1Q3W 0.858 1 2 60 LM-5 1UV5 11.941 1 3 77 LM-29 1Q41 8.576 2 7 97 Maleimide 1R0E 0 N.A. g 121 98 OxaD-0 3F7Z 10.629 1 53 99 OxaD-00 3GB2 4.637 2 9 153 Pyzo-11 3L1S 10.371 1 11 198 RM-0 1Q4L 5.568 2 25 199 Staurosporine 1Q3D 22.359 1 5 a Molecule index in the data set; b molecular name in the data set; c Protein Data Bank index for the protein structure from which the experimental conformer was extracted; d contribution f C i j * calculated using equation 6; e the rank in the set of contributions; f the number of conformers for each molecule; g the rank cannot be determined and the conformer was predicted to be irrelevant to classification based on the MILES method.
Novel Inverse Binding Mode of Indirubin Derivatives Yields Improved Selectivity for DYRK Kinases.
(2013) ACS Med Chem Lett 4
PubMed: 23336033 | PubMedCentral: PMC3545483 | DOI: 10.1021/ml300207a
11 − 17 Regardless of the notable selectivity of the various indirubin analogues, they all share a common interaction pattern with their target enzyme active site (for example, see PDB structu... es 1E9H, 2BHE, 1UV5, and 1UNH).
Publication Year: 2013
Drug activity prediction using multiple-instance learning via joint instance and feature selection.
(2013) BMC Bioinformatics 14 Suppl 14
PubMed: 24267824 | PubMedCentral: PMC3850986 | DOI: 10.1186/1471-2105-14-S14-S16
The selected conformers are clustered into eight groups based on their shape complementarity to the receptor grids (PDB IDs: 1Q3W, 1Q4L, 1R0E, 1UV5, 2OW3, F88, 3GB2, 3ZRM).
Receptor grid preparation We downloaded a set of 20 PDB structural files of GSK-3 β from the RCSB Protein DataBank (PDB) [ 29 ] (PDB IDs: 1H8F, 109U, 1Q3D, 1Q3W, 1Q4L, 1Q5K, 1Q41, 1R0E, 1UV5, 2O5K, 2OW3, 3DU8, 3F7Z, 3F88, 3GB2, 3I4B, 3Q3B, 3ZRK, 3ZRL, and 3ZRM).
The role of CDK5 and GSK3B kinases in hyperphosphorylation of microtubule associated protein tau (MAPT) in Alzheimer's disease.
(2013) Bioinformation 9
PubMed: 24497730 | PubMedCentral: PMC3910359 | DOI: 10.6026/97320630091023
Results Protein Models : The crystal structures of CDK5 (PDB id: 1UNH_A) and GSK3B (PDB id: 1UV5) being available were directly retrieved from PDB database [ 21 ].
An inhibitor-driven study for enhancing the selectivity of indirubin derivatives towards leishmanial Glycogen Synthase Kinase-3 over leishmanial cdc2-related protein kinase 3.
(2014) Parasit Vectors 7
PubMed: 24886176 | PubMedCentral: PMC4039064 | DOI: 10.1186/1756-3305-7-234
Computational analysis Homology models were built for L GSK-3 and L CRK3 of three Leishmania species (L. major, L. donovani, L. infantum- Uniprot codes Q4QE15, A6N857, A4HXQ3, O96526, Q7K8Z1, A4ICT0 )... using Prime 3.1 and the corresponding cocrystal structures of human GSK-3 and CDK5 with indirubin (pdb codes 1UV5, 1UNH) as templates [ 30 ].
Publication Year: 2014
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